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  3. RAFL09-15-A05

RAFL09-15-A05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01876)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-A05 - full reading 
TGACCATCAT TCACACACAC TCATGGCTTC TTCTTCTTCT TCTTCTTCCT 
CCATCACAAT CATCACCACC TTCCTCTTCC TTCTCCTCCA CACAACCGCC 
AAAAAAACCT ACATCATCCG CGTCAATCAC TCCGATAAAC CGGAATCATT 
CCTCACTCAC CACGATTGGT ACACATCTCA ACTCAATTCA GAATCATCTC 
TTCTCTACAC TTACACAACC TCCTTCCATG GCTTCTCCGC TTACCTCGAC 
TCCACCGAAG CCGATTCTCT CCTCTCCTCC TCAAACTCAA TCCTCGATAT 
CTTCGAAGAT CCTCTCTACA CACTTCACAC TACGCGTACT CCTGAGTTTC 
TCGGTCTCAA TTCCGAATTC GGTGTTCACG ATCTCGGTTC TTCTTCTAAC 
GGCGTTATCA TCGGAGTTTT AGATACTGGC GTTTGGCCTG AATCTAGAAG 
CTTCGATGAT ACTGATATGC CTGAGATTCC TTCTAAATGG AAAGGAGAAT 
GTGAATCTGG TTCCGATTTC GATTCCAAGT TGTGTAACAA GAAGCTTATC 
GGAGCTAGAA GCTTCTCCAA AGGATTTCAA ATGGCTTCTG GTGGTGGTTT 
TTCGAGTAAG CGTGAATCTG TTTCTCCTCG TGATGTTGAC GGACATGGAA 
CACATACTTC AACTACCGCC GCGGGATCCG CCGTTAGAAA CGCTAGCTTC 
CTCGGTTACG CCGCCGGTAC GGCCAGAGGT ATGGCCACTC GTGCTCGTGT 
TGCTACTTAT AAAGTTTGTT GGAGTACTGG TTGTTTTGGA TCTGATATAC 
TAGCTGCTAT GGATCGAGCT ATACTTGATG GTGTTGATGT GCTTTCGTTA 
TCTCTTGGTG GTGGTTCTGC TCCGTATTAT CGCGATACGA TTGCGATTGG 
AGCGTTTTCG GCTATGGAGA GAGGTGTTTT TGTGTCTTGT TCTGCTGGTA 
ATAGTGGTCC TACTAGAGCT TCTGTTGCCA ATGTTGCTCC TTGGGTTATG 
ACTGTTGGTG CTGGTACTTT AGATAGAGAT TTTCCGGCTT TTGCGAATCT 
CGGTAACGGG AAACGACTTA CCGGTGTTTC GCTGTATAGC GGTGTAGGAA 
TGGGGACGAA GCCGCTTGAA TTGGTTTATA ATAAAGGGAA TAGTAGTTCG 
AGTAATCTTT GTTTACCTGG TTCGCTTGAT TCGAGTATTG TTCGTGGGAA 
GATTGTTGTT TGTGATAGAG GTGTTAATGC TAGAGTTGAG AAAGGAGCTG 
TGGTTAGAGA TGCTGGTGGT TTAGGGATGA TAATGGCGAA TACTGCTGCG 
AGTGGAGAGG AGCTTGTGGC GGATAGTCAT TTGCTTCCCG CGATCGCTGT 
AGGGAAGAAG ACTGGTGATT TACTTAGGGA GTATGTTAAG TCAGATTCTA 
AACCAACCGC TCTTCTTGTT TTTAAAGGAA CGGTTCTTGA CGTTAAGCCG 
TCTCCTGTGG TTGCTGCTTT TAGCTCGAGA GGTCCTAATA CTGTTACTCC 
TGAAATCTTG AAGCCTGATG TTATTGGTCC TGGAGTTAAT ATTTTGGCTG 
GTTGGTCTGA CGCTATTGGT CCTACTGGTC TTGACAAGGA CTCTAGGAGG 
ACTCAGTTCA ACATCATGTC AGGTACGTCA ATGTCATGCC CACACATCAG 
TGGTTTAGCG GGTCTTTTGA AAGCAGCTCA CCCTGAGTGG AGTCCGAGTG 
CTATCAAATC AGCTCTCATG ACTACAGCTT ACGTTCTTGA CAACACCAAC 
GCTCCTCTCC ATGATGCTGC AGACAACAGC CTATCTAACC CATATGCTCA 
CGGCTCGGGC CATGTAGATC CCCAAAAGGC TCTCTCACCA GGTCTTGTCT 
ACGACATCTC AACCGAGGAA TACATCAGGT TTTTGTGCTC TCTAGACTAC 
ACAGTCGATC ACATTGTTGC GATTGTGAAG CGACCTAGCG TTAACTGCTC 
GAAGAAGTTC TCAGATCCTG GTCAGCTCAA CTACCCAAGT TTCTCGGTTT 
TGTTTGGGGG TAAAAGAGTT GTGCGGTACA CTCGGGAAGT AACAAATGTT 
GGTGCAGCAA GCTCGGTTTA CAAAGTGACG GTTAATGGAG CTCCTAGTGT 
CGGAATCTCT GTTAAACCAT CGAAACTTTC GTTTAAAAGC GTGGGAGAGA 
AGAAGAGGTA CACAGTCACG TTTGTTAGCA AGAAAGGAGT GAGTATGACG 
AACAAGGCTG AGTTTGGTTC CATCACTTGG AGCAATCCGC AGCACGAAGT 
GAGAAGTCCC GTTGCATTCT CTTGGAACCG GTTTTGATAA AAAAACTAAC 
ATCCCTAGTG ATGATGTTTT CTATTTAAGT TATCTTGATT GGGTTTAGGC 
TAAACCAAAG CCCATCATGA GCCATAAGTA GTGGGAAGTG TTCTTGTGTG 
GTTTGGTTTG AGTCATTGAG TGTGTAGGTG AAAGCATCCC AAAAAAAGTT 
AGGGATGATA AAAGAAAATG TTGTCAGGAA AAGAACGTTG ATGTCGTCAT 
ATGTAGTGCT TCAAGTTTCT TCAAGAAAAA AAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G05920.1 [+] show detail - Subtilase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
HMMPanther Peptidase S8, subtilisin-related 0
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 7.3e-13
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 7.3e-13
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 7.3e-13
HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 1.4e-29
HMMPfam Protease-associated PA 2.9e-17
HMMPfam Proteinase inhibitor I9, subtilisin propeptide 5.7e-12
superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 6e-77
superfamily Transferrin receptor ectodomain, apical domai 6.5e-08
superfamily Proteinase inhibitor, propeptide 8.3e-06
Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 5.9e-72
PatternScan Peptidase S8/S53, subtilisin, active site 0

See the detailed result >

AT2G05920.1

Model type
Protein coding
Short Description
Subtilase family protein
Computational Description
Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: Subtilase family protein (TAIR:AT5G67360.1); Has 7371 Blast hits to 6472 proteins in 1023 species: Archae - 222; Bacteria - 3849; Metazoa - 147; Fungi - 727; Plants - 1890; Viruses - 0; Other Eukaryotes - 536 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-A05 introduced

  • F03945 - seed::increased size / seed::increased length
  • F17508 - Specific phenotypes were NOT observed.
  • F17513 - Specific phenotypes were NOT observed.
  • F30407 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found