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  3. RAFL09-15-B12

RAFL09-15-B12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01996)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-B12 - full reading 
ATCAACAATA ATAGAAAAAG CCCTAACTTT CTCCGTCGAT GGCTTTCTTC 
TCCTACTTTT TCTTCCTCTT GACTCTTTCT TCTCCTTCTT CTTCTGCTTC 
CTCTTCAAAC TCCTTGACTT ACATCGTCCA CGTCGACCAC GAAGCTAAAC 
CCTCAATCTT CCCCACTCAT TTTCACTGGT ACACTTCCTC TCTTGCCTCA 
CTCACCTCTT CTCCTCCCTC CATTATCCAC ACATACGACA CCGTTTTCCA 
TGGCTTCTCC GCTAGACTCA CTTCACAAGA CGCTAGTCAA CTCTTAGACC 
ATCCTCATGT CATCTCTGTT ATCCCGGAAC AAGTCCGTCA CTTGCACACC 
ACTCGTTCCC CTGAGTTTCT TGGTCTTAGG TCCACCGACA AAGCGGGTCT 
ACTCGAAGAG TCTGATTTCG GGTCGGATCT AGTTATCGGA GTTATCGATA 
CTGGTGTTTG GCCCGAAAGA CCTAGCTTTG ATGACCGTGG TCTTGGTCCT 
GTTCCCATTA AATGGAAAGG CCAATGTATC GCTTCCCAAG ATTTTCCGGA 
GTCTGCTTGT AACCGTAAAC TCGTCGGAGC TAGATTCTTC TGCGGTGGGT 
ATGAAGCAAC CAACGGGAAA ATGAATGAAA CGACTGAGTT TCGCTCTCCG 
CGTGACTCCG ATGGACATGG GACTCACACA GCTTCAATCT CCGCCGGCCG 
TTACGTTTTT CCGGCGTCAA CTCTCGGCTA CGCTCACGGC GTCGCTGCTG 
GGATGGCTCC AAAAGCTAGA CTCGCCGCTT ACAAAGTCTG TTGGAACTCC 
GGTTGTTACG ACTCCGATAT CTTAGCCGCT TTCGACACCG CCGTTGCCGA 
CGGTGTCGAT GTCATCTCTC TCTCCGTTGG AGGCGTCGTG GTTCCTTATT 
ACCTAGACGC TATCGCTATT GGAGCTTTTG GAGCTATTGA CAGAGGCATA 
TTCGTCTCTG CTTCCGCCGG TAACGGAGGT CCCGGTGCTT TAACGGTGAC 
AAATGTTGCT CCGTGGATGA CAACAGTCGG AGCTGGAACA ATCGATAGGG 
ATTTTCCGGC CAATGTGAAA CTCGGTAACG GGAAGATGAT TTCTGGTGTT 
AGTGTATACG GTGGACCGGG TCTGGATCCG GGTCGAATGT ACCCGCTTGT 
TTACGGTGGT AGTTTACTAG GCGGCGATGG TTACTCATCG TCTCTGTGTC 
TTGAAGGCTC GTTGGATCCG AATTTAGTGA AGGGAAAGAT CGTTCTTTGT 
GATAGAGGAA TCAATTCTAG AGCAACCAAA GGTGAGATCG TACGGAAAAA 
TGGAGGCTTG GGGATGATTA TAGCGAATGG TGTGTTTGAC GGTGAAGGTT 
TAGTAGCTGA TTGCCACGTG TTACCGGCGA CATCTGTTGG TGCTTCTGGA 
GGAGATGAGA TTCGTAGGTA TATCTCTGAA TCATCCAAAT CTCGTTCATC 
GAAACATCCA ACGGCTACGA TTGTTTTCAA AGGTACCCGA CTTGGGATCC 
GACCTGCACC GGTTGTTGCA TCTTTCTCTG CTCGTGGTCC TAATCCAGAG 
ACGCCGGAGA TTCTTAAACC GGATGTAATC GCACCTGGTT TGAATATTCT 
AGCTGCTTGG CCTGACCGGA TTGGTCCATC TGGTGTTACT TCTGATAACC 
GGAGAACTGA GTTCAACATT TTATCAGGCA CTTCGATGGC GTGCCCGCAC 
GTGTCTGGTC TAGCTGCTTT GCTTAAGGCG GCTCATCCGG ATTGGAGTCC 
GGCGGCGATA AGATCAGCAT TGATAACCAC GGCTTACACG GTTGATAACA 
GCGGTGAGCC GATGATGGAT GAGTCCACTG GCAATACATC TTCGGTTATG 
GATTATGGTT CGGGTCATGT TCACCCAACC AAAGCTATGG ATCCGGGATT 
AGTCTATGAT ATAACATCTT ATGATTATAT CAACTTCTTG TGTAATTCTA 
ACTACACTAG AACCAACATT GTGACAATAA CCCGTCGCCA AGCGGACTGT 
GACGGTGCAA GACGAGCGGG ACACGTCGGG AATTTAAACT ACCCGTCGTT 
CTCTGTCGTG TTTCAGCAGT ATGGAGAGAG TAAAATGTCG ACACATTTCA 
TTAGGACTGT GACAAATGTA GGCGATTCGG ATTCGGTTTA CGAGATTAAG 
ATTAGGCCGC CTAGAGGGAC TACGGTGACG GTTGAGCCGG AGAAGCTATC 
GTTCAGACGG GTGGGGCAGA AACTGAGTTT TGTTGTTAGG GTTAAGACCA 
CAGAGGTGAA GTTGTCACCA GGAGCGACAA ATGTGGAGAC TGGTCATATA 
GTTTGGTCAG ATGGGAAACG GAATGTGACA AGTCCCTTGG TGGTCACTCT 
TCAACAACCT CTTTGAAGGG GTTTAGGATC TGGTGACCGG GAAAATTCTG 
GTCTCTGTTT GTTGTACTAG TGAAAAAGAA AGATCATAAG TTGTTGTTGT 
TGTCGTCTAT GATCTTTGTT GGTGTAATAT AAATATGTAT CTTTTGTTTT 
GTTGTTAGGA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G14240.1 [+] show detail - Subtilase family protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
PatternScan Peptidase S8/S53, subtilisin, active site 0
HMMPanther SUBTILISIN-LIKE PROTEASE (PLANT) 0
HMMPanther Peptidase S8, subtilisin-related 0
HMMPfam Peptidase S8/S53, subtilisin/kexin/sedolisin 5e-31
HMMPfam Proteinase inhibitor I9, subtilisin propeptide 3e-17
HMMPfam Protease-associated PA 4.9e-15
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
FPrintScan Peptidase S8/S53, subtilisin/kexin/sedolisin 8e-16
Gene3D Peptidase S8/S53, subtilisin/kexin/sedolisin 1e-75
superfamily Peptidase S8/S53, subtilisin/kexin/sedolisin 1.1e-82
superfamily Proteinase inhibitor, propeptide 2.9e-08
superfamily Transferrin receptor ectodomain, apical domai 6.6e-07

See the detailed result >

AT3G14240.1

Model type
Protein coding
Short Description
Subtilase family protein
Computational Description
Subtilase family protein; FUNCTIONS IN: identical protein binding, serine-type endopeptidase activity; INVOLVED IN: proteolysis, negative regulation of catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), Proteinase inhibitor, propeptide (InterPro:IPR009020), Peptidase S8/S53, subtilisin/kexin/sedolisin (InterPro:IPR000209), Peptidase S8, subtilisin-related (InterPro:IPR015500), Peptidase S8/S53, subtilisin, active site (InterPro:IPR022398), Proteinase inhibitor I9, subtilisin propeptide (InterPro:IPR010259); BEST Arabidopsis thaliana protein match is: subtilisin-like serine protease 2 (TAIR:AT4G34980.1); Has 8878 Blast hits to 7637 proteins in 1214 species: Archae - 263; Bacteria - 5045; Metazoa - 160; Fungi - 690; Plants - 1978; Viruses - 0; Other Eukaryotes - 742 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-B12 introduced

  • F16025 - cauline leaf::decreased size / stem::abnormal / stem::abnormal
  • F26601 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found