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  3. RAFL09-15-B21

RAFL09-15-B21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01808)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-B21 - full reading 
AGAGAGAAGA GAAGAGAAGA GGAGACTACA CTGCTCCATC ATCTTCTCCT 
TCTGGGGATT TTTTTTTGGA AAAATCGTTC TGTTACCTTT TTTTTGCCCA 
TTACTCAAAC CCTAACCCTA ATTTTCTGAA ATCGCAGAGA GAGAGAGAGA 
GAGGTTTCTT CGAATTCTTT CATCATCAAT TCGCTAACTT TGTTTTTTTG 
GGGTTAAATC GATTAATCGT TATTTTATTA GATACTGTCG ATCGGAGCTA 
ATCGACTCTC TCTTAACAAA CCCTAATTTT TTGGTCCTCT CTCATGGCTT 
CCGCCACTTC CAATAACCCT GCTTCTTCTT CTATGTCTCC TCGTCGTATC 
AGCGGGAATC ACGGCAGCCC CACCGCTTCC GTAGCACAAT CACCTCGCCG 
TCCTTCTCGG CAGGTTTCTT CTCCGTGGAC TCAAATCGTC CGCGGCGAAT 
CAGAGCCGAT CGCCGCCGCC GCCGCTGTAG CCGGTCCTTC CTCTCCTCAA 
TCCAGGGCTC CGATCGAGCC GATTGCTTCT GTATCCGTTG CTGCTCCAAC 
TGCTGCTGTT TTGACGGTGG AGGCGGCGGC TGGTGATGAG AAATCGGAAG 
CATCTGGTGG TCAGGACAAT GCTGGAAAGA AACCAGTTTG GAAAAGGCCG 
TCTAATGGGG CTTCTGAGGT TGGACCTGTC ATGGGAGCTT CTTCGTGGCC 
TGCTCTTTCT GAGACCACCA AAGCTCCTTC CAACAAGTCT TCTTCTGATT 
CGTTAAAAAG TCTCGGTGAT GTACCATCAT CATCGTCAGC ATCATCATCT 
GTCCCCGTTA CTCAGGGAAT TGCAAATGCT TCTGTTCCTG CACCAAAGCA 
AGCTGGCCGT GCAAACCCTA ATCCAACTCC AAATCACTCG CGCCAGAGAT 
CATTTAAACA ACGCAATGGC GCCTCTGGAT CAGCTAATGG TACTGTTTCT 
CAACCATCAG CGCAGGGTTC ATTTACCGAA TTGCCTTCGC ACAACCCTTC 
TCCTAGAGGC CAAAACCAGA AGAATGGCTT TGCGTCACAA AACCATGGTG 
GTACTGAAAA CCCATCTCAA CGAGACTCCT ACAGGAACCA AAACGGTAAT 
CATCACCAAA GTCACGGTGG CAGGCGCAAT CAGGAGCACG GGAATCAAAA 
TTGGACTTTT CAAAGAAGTT TTAACGGGAG AGAAGGAAAT GCGCAATCGC 
AAAGAGGTAC TCCAGCTTTT GTAAGACATC CATCACCAAC TGTGCAGCCA 
ATTCCTCAGT TTATGGCAGC TCAGCCTTTT CCCAGTCATA TACCCTTCCC 
TACTGAATTG GCACAGTCGT CGTATTATCC CCGTATGCCT TACATGACAC 
CTATTCCGCA TGGTCCGCAG TTCTTCTACC ATTATCAAGA TCCTCCGTTA 
CACATGAAAC TGCATAAGCA AATACAATAT TATTTTAGTG ATGAAAATTT 
GATTACAGAC ATATACCTTC GAGGGTTCAT GAATAATGAG GGTTTTGTTC 
CGCTACGTGT GGTAGCTGGT TTCAAAAAGG TTGCAGAACT TACAGATAAT 
ATCCAGCAGA TAGTGGAGGC TCTTCAAAAT TCACCTCATG TTGAAGTGCA 
GGGTGACTTC ATAAGGAAGC GCGATAATTG GCAAAATTGG GTGCTAAGGA 
GGAACCCTAC AGGTTCCGGC CCCCAATCTG TTGATAGGGC AGATGCAGTG 
GCAAAACGAC TTGGAAACTT GTCAGTTGAT CAGAGTTCGG CTGATCCCAT 
TGGTGGTTCG AGCAGTCAGT TGCAACCTAC AGAAGCTCTT TCAGATGATC 
AGCAACAGTC TTCTAGTACT GCTCCAGTGA GCAACCACAA CGCCCCAGAT 
GGTGCAAACC GTTGAACCAT CAAGTTTGGG GGCTGTTGGT TAGTGTTGGA 
CATGAATATA TTATTTTGTC TTGCCCAAAA TGAGGAAAAC AATAATGAAG 
GGGAACCAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT4G35890.1 [+] show detail - winged-helix DNA-binding transcription factor family protein
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
superfamily "Winged helix" DNA-binding domain 2.9e-30
ProfileScan RNA-binding protein Lupus La 25.024
HMMPfam RNA-binding protein Lupus La 5.7e-22
Gene3D Winged helix-turn-helix transcription repressor DNA-binding 3e-22
HMMPanther LUPUS LA PROTEIN-RELATED 2.5e-41
HMMSmart RNA-binding protein Lupus La 3.7e-22

See the detailed result >

AT4G35890.1

Model type
Protein coding
Short Description
winged-helix DNA-binding transcription factor family protein
Computational Description
winged-helix DNA-binding transcription factor family protein; LOCATED IN: chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630); BEST Arabidopsis thaliana protein match is: winged-helix DNA-binding transcription factor family protein (TAIR:AT5G66100.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-B21 introduced

  • F13948 - seed::increased size / seed::increased length
  • F18141 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found