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  3. RAFL09-15-C08

RAFL09-15-C08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01926)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-C08 - full reading 
CTCTTTCTTT CTCTCTCTCA GCCCTAAGAG AGAAGAAATA GGCTCTGCTC 
TGCGCCTTTT CTACAAGAAA TTCACCAAAA AAGCTTGAAT ATTTATCGGA 
ATCAAAGCTT GGGTTTTTAA TCCTGGTAAA GCCATGTCAC ATATGGTGTT 
TCAGAGCGTT GTCGCTCCCA AACCCTTATC TCCTCTCAAA CCCTGTTTAC 
CTATCCCTCG TCCACTCGTT ACTCTGCCTT GTAAGCTCCG TCGTGGCTTC 
GTTAGAGCTT CTTCGTCCTC GTTTCTTGTC GATGATTCAG TTTCAGGACT 
CGAGCGTTGC TTACAGTTAC CTTCTGGAGT TGAGTTAGGC ACATCTTCCT 
CTGGCTCTTT CTCTGCAAGT ACTCAGATGT GTCCTGTGAT GAAAGGCAAA 
TTTGGTTCGG TAGGAGCTGT TACTTTGGAA AAAGGGAAGC TTGATATGAC 
CCAGAAGATT TCTGAGACTA GCCCTGAGAT TGCAACTGGA GGAGGGGGTG 
GAAACATTGG AAAGAGTATC AATAATGGTG GTGGCGATGG AGGTGACGAT 
AATGGTGATG ATGATGATTA CTTTGATGAA TTCGATGATG GTGATGAGGG 
AGATGATGAT GGACTTTTTA GGCGTAGGAT GTTTCTCGCA GAGATTTTTG 
ATAGGAAATT CGTTGATGCT GTGTTGAATG AATGGCAAAA AACAATGATG 
GATTTACCTG CCGGTCTCCG TCAAGCATAT GAAATGGGTT TGGTCAGCTC 
AGCTCAAATG GTGAAATTCC TTGCCATAAA TGCCCGTCCT ACAACGACTA 
GAATGATCTC CCGTGCCCTT CCTCAGGGAT TATCGAGGGC CTTTGTTGGC 
AGGATGTTGG CGGATCCTGC ATTTCTCTAT AAACTTCTTT TGGAGCAAGC 
TGCCACGGTT GGATGCTCAG TTTGGTGGGA GGTGAAGAAT CGTAAGAATA 
GACTAAAAGA GGAATGGGAT CTTGCACTTA TAAATGTTCT TACTGTATCA 
GCATGCAATG CAGCTGCTGT TTGGTTACTA GCTCCATGTC GTTCCTATGG 
AAACACATTC CGGTTTGACC TGCAAAATAC ATTACAAAAG CTACCAAATA 
ATTTATTTGA AATGAGCTAT CCTCTTAGAG AGTTCGACTT GCAAAAGAGA 
TTTCATTCTC TTTTCTACAA GGCTGCAGAG TTGTCCATTC TTGGACTCGC 
AGCAGGAACA CTCCAGGGTT CGTTGTCAAA CGTTCTAGCA GGAAAGAAGA 
AGAACAGAGT ATCTGTGACG GTCCCATCTA TCAGCACAAA TGCTCTTGGT 
TATGGTGCAT TTCTTGGAAT ATATGCCAAC TTGAGATATC AGCTGTTATG 
TGGATTTGAA AGAGGAGTGA GCAGTCACTT TGACGTCATA GGAGTAGCAC 
TCTTCTTCGG CACTGCCTTG AGGATTATGA ATGTGCAATT AGGGGAAAAG 
TCAAGACAAG TATGGCTAGG TGTAGAGGCA GACCCACTGG CGCAGTCAGA 
TGATCTGCTG GCAAAAGCAT ACAACCGACC CTCAGAGGAA GCAGTAGCAA 
AGCCATCTTC AAAATGGTTC ATCTCAAAGA ATGCAATTGT CTCAGGGCTA 
CTCGGGAAGA AGCAAGAAGA TTCAGTTTCA GATTCTCCAC CTCCAAAGGC 
TCGGCGAAAA AGGATAGTGA GGAAGAAGGT GGCTGCATCT GCCTCTTAAA 
TAACCAACAA AACCTCTAAA ATGTCACAAT TTTCAGAGTC CATGGAAGAA 
CAACAGTGAG GTTTTGTTGT TCATTTGAGG CACACATGAA AAAGGTTTTG 
TTGCCAGAGG AAGGAAGAAG GGATCACCAA ACTTGGAGGA ATTGAAAAAA 
AGCTCTATAG CTTCTTTTTT TTTTTTTTTA CTTTATGACT CGTTCTCTCT 
AGTTTTAAGT GCTTTTGGAA AGACATTTCT ATTTTTAGGT GTGGTGATAA 
AGATGCTTAT CTCTGGTTAA AATTCTGTAT TTTCTCAATG TTTCTAATAA 
ATAGCCACAT CTTATACGTT CGTAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G24690.1 [+] show detail - Protein of unknown function (DUF3411)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT5G24690.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3411)
Computational Description
INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3411 (InterPro:IPR021825); BEST Arabidopsis thaliana protein match is: reticulata-related 1 (TAIR:AT5G22790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-C08 introduced

  • F12238 - Specific phenotypes were NOT observed.
  • F13019 - Specific phenotypes were NOT observed.
  • F17938 - rosette leaf::abnormal / stem::desaturated green / cauline leaf::abnormal / whole plant::decreased height / fruit::abnormal

Mutant lines with disrupted or induced

3 mutant lines found