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  3. RAFL09-15-E19

RAFL09-15-E19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01789)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-E19 - full reading 
TGAAGGTAGG GCTAAAACCT TAGAATAGCC GGAGAGAAGA AGGCGAGAAG 
AGGAGCGACA AGGGCGAAGC TGCAGAATTC TTCGGTAATT TTCAGATTCG 
GTTGAATAAT GGCGGCTGCG GCTTTTGGGC AGTTAAATCT AGAGGAGCCT 
CCACCGATTT GGGGATCTCG TAGTGTCGAT TGCTTCGAGA AGCTTGAACA 
GATTGGTGAA GGAACTTACG GCCAAGTGTA CATGGCTAAA GAAATTAAAA 
CTGGTGAAAT CGTGGCTCTG AAAAAGATCC GTATGGACAA TGAAAGAGAA 
GGGTTTCCGA TAACCGCTAT CCGGGAGATC AAAATTCTGA AGAAGCTGCA 
TCATGAAAAT GTCATCCATT TGAAAGAGAT TGTTACTTCT CCAGGTCGAG 
ATAGGGATGA TCAAGGAAAG CCAGATAATA ACAAATACAA GGGTGGAATC 
TACATGGTCT TTGAGTACAT GGATCATGAC TTGACTGGAC TTGCTGATCG 
TCCTGGACTG AGATTTACGG TTCCTCAGAT AAAGTGTTAC ATGAAGCAAC 
TGCTGACTGG GCTTCACTAT TGTCATGTGA ATCAAGTGCT TCACCGTGAT 
ATAAAAGGTT CGAATCTACT TATTGACAAT GAGGGAAATT TAAAGCTAGC 
GGATTTTGGG CTTGCTCGGT CATATTCTCA TGATCATACT GGAAACCTCA 
CAAATCGTGT CATCACTTTG TGGTATAGGC CCCCTGAATT GTTACTTGGT 
GCAACTAAAT ATGGACCAGC GATTGACATG TGGTCAGTTG GATGCATATT 
TGCTGAACTT TTGAATGGAA AACCAATCTT GCCTGGGAAA ACTGAGAATG 
AACAATTGAA TAAGATTTAT GAGCTTTGTG GATCACCTGA TGAAAGCAAC 
TGGCCTGGAG TTTCCAAGAT GCCTTGGTAT AACCAAATGA AATCATCTCG 
GCCCTTAAAG AGACGCGTAA GGGAGATCTA CAGACACTTT GATCGCCATG 
CCCTTGAACT ACTTGAGAAA ATGTTGGTAC TTGACCCATC TCAGAGAATA 
TGCGCAAAGG ATGCTCTTGA TGCTGAGTAC TTTTGGACTG ATCCGCTGCC 
ATGTGATCCA AAGAGTCTAC CGACATATGA ATCATCACAT GAGTTCCAGA 
CAAAGAAAAA ACGGCAACAG ATGCGTCATA ATGAGGAAGC AGCCAAAAAA 
CAGAAACTGC AGCATCCACA GCAGCAACAT TCTCGTTTAC CTCCACAGCA 
ACACGGTGTT GGCCAGTCTC ATGCCGCTCC ACTTTGGCCT GCTGGACCAA 
ACCACCCTAT GAACAACAAC GCACCACCAC CCCAAATACC TGCTGGTGGC 
CATTACTATG GAGGAAAGCC CCGTGGTGGT GCACCTGTTC CAAACCGGTA 
CCCTCCTAGC GGAAACCAGA CTGGTGGTTA TAATAATCAG AGCCGTGGAG 
GTTACAGCAG CGGAGCATAT CCTCCACAAG GTCGTGGTGC ACCATATGGC 
GCCGGTCCTA GAGGACCTAG CGGTGGCTAT GGTGTTGGAC CACCCAACTA 
CTCACAAGGT GGTGGTCAGT ATGGTGGATC TGGTGGCTCT GGAAGAGGTC 
AGAACCCTAT GGGTGGTGCT AGAAACCAAC AATATGGATG GCAACCGTAA 
AGAGAACTCA AAGAGACTCG TATGGTGTGG TCTTGGCTTG ATGTCTTTAA 
GGCAGTTGTG ATTTTAGATA TGAAGACTTA TCTTCGCGAA AGAGAATCTA 
TTTTCATTTG ATTTCTTGTC TTAATGGCAT TCTTCCAAAC ATTCTGTGAT 
TGTTGTATGT TTAAATCAAG GTTTATATAT CAGAACACAG GAAACCAAAA 
AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT5G64960.1 [+] show detail - cyclin dependent kinase group C2
    E-value: 0; Score: 100.00

AT5G64960.1

Model type
Protein coding
Short Description
cyclin dependent kinase group C2
Curator Summary
Encodes CDKC;2, part of a CDKC kinase complex that is targeted by Cauliflower mosaic virus (CaMV) for transcriptional activation of viral genes. Also regulates plant growth and development. Co-localizes with spliceosomal components in a manner dependent on the transcriptional status of the cells and on CDKC2-kinase activity. Expression of CDKC2 modifies the location of spliceosomal components.
Computational Description
cyclin dependent kinase group C2 (CDKC2); FUNCTIONS IN: kinase activity; INVOLVED IN: in 6 processes; LOCATED IN: cytosol, nuclear body, nucleus, microtubule, spliceosomal complex; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase domain (InterPro:IPR002290), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase C;1 (TAIR:AT5G10270.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-E19 introduced

  • F11608 - Specific phenotypes were NOT observed.
  • F14928 - Specific phenotypes were NOT observed.
  • F21937 - Specific phenotypes were NOT observed.
  • F22543 - rosette leaf::decreased size / stem::increased thickness / stem::abnormal / whole plant::decreased height

Mutant lines with disrupted or induced

4 mutant lines found