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RAFL09-15-G07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17646)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-G07 - full reading 
TTTGCCTCAA AAGATGCAGA TCTTCGTGAA AACCCTAACG GGGAAGACCA 
TAACCCTTGA GGTTGAATCA TCCGACACCA TCGACAATGT GAAGGCGAAG 
ATCCAAGACA AGGAAGGAAT CCCACCGGAC CAGCAGCGAT TGATTTTCGC 
CGGGAAACAG CTTGAAGACG GCCGTACCCT CGCCGACTAC AACATCCAGA 
AGGAATCGAC GCTTCATCTC GTCCTCCGTC TCCGTGGTGG TGCTAAGAAG 
AGGAAGAAGA AGACTTACAC CAAGCCGAAG AAGATCAAGC ACAAGCATAA 
GAAGGTTAAG CTCGCTGTTC TTCAGTTTTA CAAAATCGAT GGATCTGGAA 
AGGTTCAGCG TTTGAGGAAG GAGTGCCCTA ACGCAACCTG TGGAGCTGGG 
ACTTTCATGG CGAGTCATTT TGATCGCCAT TACTGTGGTA AGTGTGGACT 
CACCTACGTT TACCAGAAAG AAGGAGTTGA AGCTTGATCT GTTGTAGCGG 
TAGATCGATC CTTCTCTTTC TCTCTTATCT TTTAAAAACT GCATTTCTAT 
TTGGGAATTT TGTAAGCTCT TTAATTTGAG TTATCATGGA TTCTATGTTG 
AACATCTTTC GTTCTGGATT ATAAATTATG GAAGGTTTTA GTAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT3G62250.1 [+] show detail - ubiquitin 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Ubiquitin 3e-35
Gene3D no description 1.1e-30
PatternScan Ubiquitin conserved site 0
FPrintScan Ubiquitin subgroup 6.2e-39
FPrintScan Ubiquitin subgroup 6.2e-39
FPrintScan Ubiquitin subgroup 6.2e-39
HMMPanther UBIQUITIN 1.5e-79
HMMPanther UBIQUITIN 1.5e-79
superfamily Ubiquitin-like 5.7e-35
ProfileScan Ubiquitin supergroup 30.452
HMMPfam Ubiquitin 2.1e-34
HMMPfam Ribosomal protein S27a 1.1e-26

See the detailed result >

AT3G62250.1

Model type
Protein coding
Short Description
ubiquitin 5
Computational Description
ubiquitin 5 (UBQ5); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: protein ubiquitination involved in ubiquitin-dependent protein catabolic process, translation; LOCATED IN: cytosolic small ribosomal subunit; CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ribosomal protein S27a (InterPro:IPR002906), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: ubiquitin 6 (TAIR:AT2G47110.2); Has 12703 Blast hits to 7391 proteins in 781 species: Archae - 108; Bacteria - 19; Metazoa - 5541; Fungi - 1408; Plants - 3106; Viruses - 188; Other Eukaryotes - 2333 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-G07 introduced

  • F09412 - Specific phenotypes were NOT observed.
  • F09604 - rosette leaf::dark green / stem::dark green / cauline leaf::abnormal / stem internode::decreased length / stem::abnormal / stem::abnormal
  • F13747 - Specific phenotypes were NOT observed.
  • F16447 - rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness
  • F17736 - Specific phenotypes were NOT observed.
  • F18410 - seed::increased size

Mutant lines with disrupted or induced

7 mutant lines found