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  3. RAFL09-15-G15

RAFL09-15-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02039)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-G15 - full reading 
ATCTCTTATC CGAATCCTCC CAATTTGTCT GTCTCTCTTT TGTTTTCTCT 
GCTAACAGAT CTCTCTAAAT ATCTGTTACT TTTGTTCATA TCTTTTTACT 
TTTCAAACTA CTAATTTTCC TTTCGCTTCT TCTATTAATA ACAACACTCT 
CTCTCTCAGA CTTCTTTTCT TTTTTTTCTA CGGCGTTGAT TCATTCGCAA 
TGACCTCAGT TTCTGTGTAC CATAATTGAC CTAGCAGATT CTGTTTTTAA 
TGGTAGATTC TGACCCGGTG GAATTTCCGC CGGAGAACCG CCGTGGACAG 
CTCTTCGGCA AATACGAGGT CGGAAAATTG GTGGGATGCG GCGCCTTCGC 
GAAAGTGTAC CACGGGAGGA GCACAGCGAC GGGTCAGAGC GTTGCGATCA 
AAGTGGTGAG CAAGCAACGG CTGCAGAAAG GAGGACTCAA TGGCAACATT 
CAGAGAGAGA TCGCTATCAT GCACCGTCTG CGCCACCCTT CTATCGTGCG 
CCTGTTCGAG GTCCTCGCCA CCAAATCCAA GATCTTCTTC GTCATGGAAT 
TCGCCAAGGG CGGTGAGCTA TTCGCCAAAG TCTCCAAGGG CAGGTTCTGC 
GAGGATCTTA GCCGTCGTTA TTTCCAGCAG CTCATCTCCG CCGTCGGATA 
TTGCCACTCC CGCGGCATCT TTCACCGTGA TCTCAAACCG GAGAATCTCC 
TCCTCGACGA GAAGCTCGAT TTGAAGATCT CTGATTTCGG ACTCAGCGCT 
CTTACCGATC AGATCCGACC CGACGGCCTC CTCCACACAC TCTGTGGTAC 
GCCGGCGTAC GTGGCGCCTG AGGTTTTGGC GAAGAAAGGG TACGACGGTG 
CTAAAATCGA CATATGGTCA TGTGGAATCA TACTGTTCGT CCTCAACGCC 
GGTTATCTCC CTTTCAACGA CCATAATCTC ATGGTTATGT ACCGGAAAAT 
CTACAAGGGA GAATTTCGCA TTCCCAAGTG GACCTCACCG GATCTCCGGC 
GACTGCTGAC TCGGCTTTTA GACACGAATC CGCAGACGAG GATCACTATC 
GAAGAGATCA TCCACGATCC ATGGTTCAAA CAGGGCTACG ACGATCGGAT 
GTCTAAATTC CATCTAGAGG ACTCCGATAT GAAACTCCCG GCGGACGAGA 
CCGACAGCGA GATGGGAGCA AGGAGGATGA ACGCATTCGA CATCATCTCA 
GGATCTCCAG GGTTCAATCT CTCCGGTCTT TTCGGAGACG CCAGAAAGTA 
CGACCGAGTG GAACGGTTCG TGTCGGCGTG GACGGCGGAG AGGGTGGTGG 
AGAGGCTGGA GGAGATCGTG TCGGCGGAGA ATCTGACGGT GGCGAAGAAG 
GAAACATGGG GGATGAAGAT CGAGGGGCAA AAAGGTAACT TCGCAATGGT 
GGTTGAGATA AACCAGCTAA CGGACGAGCT GGTTATGATA GAGGTGAGGA 
AGAGACAAAG AGCCGCTGCA TCTGGACGAG ATTTATGGAC AGATACACTC 
AGGCCTTTCT TCGTCGAGCT TGTGCACGAA TCAGACCAAA CGGACCCAGA 
ACCAACTCAA GTACATACGA CGTCGTAGTT TAGGTATCTG TCAAATAAAT 
TATCCAAATA ATAATTAAAA AAAAATATCC CGGGTTATAT GTAATTGCTT 
TTTTTTTTAC CCGGAGAATA TCTCTGACAT AATTATTCAG GAAATTTCTC 
GACAAATCTT AATTTTTAGT TGGCAAGTAT GTATCTTCTT GTTATGTAAT 
CATAATTATA TTTTATATAA ATGAAAAATA AAATACAAAA AAAAAAAAAA 
AA

Gene models with high sequence identity

  1. AT5G01820.1 [+] show detail - serine/threonine protein kinase 1
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
superfamily Protein kinase-like domain 3.3e-89
ProfileScan Protein kinase, catalytic domain 50.28
ProfileScan NAF/FISL domain 11.688
HMMPfam Serine/threonine-protein kinase-like domain 8.9e-73
HMMPfam NAF domain 1.3e-20
Gene3D no description 2.9e-64
HMMSmart Serine/threonine-protein kinase domain 2e-102
HMMSmart Tyrosine-protein kinase, catalytic domain 3.6e-12
HMMPanther CBL-interacting protein kinase 5.9e-194
HMMPanther Calcium/calmodulin-dependent protein kinase-like 5.9e-194

See the detailed result >

AT5G01820.1

Model type
Protein coding
Short Description
serine/threonine protein kinase 1
Curator Summary
Encodes a CBL-interacting serine/threonine protein kinase.
Computational Description
serine/threonine protein kinase 1 (SR1); FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: signal transduction, protein amino acid phosphorylation; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), NAF/FISL domain (InterPro:IPR018451), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), NAF domain (InterPro:IPR004041), CBL-interacting protein kinase (InterPro:IPR020660), Protein kinase, catalytic domain (InterPro:IPR000719), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: SOS3-interacting protein 4 (TAIR:AT2G30360.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-G15 introduced

  • F25945 - seed::increased size

Mutant lines with disrupted or induced

7 mutant lines found