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  3. RAFL09-15-H08

RAFL09-15-H08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01950)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-H08 - full reading 
GTGATCTTCC TATTTCTGAC GCTAATTCGA ATCCTTCACT CTTCAAATTG 
ATTCTTTCAC GGATCAAACA AATTATCTGA GAGTACCGAT TGGTAAGATC 
TGAGCTTTAC GCTATGAATT TCTTCAAATC CGTCTTCACG GAAGACCTAG 
ATCCTCCAGA AACCGAATCC GAATCCGATT CACCGAAACA CAGCGAAGAG 
CATGAACATC CAGAGCAAGA ACATCCAGAG CAATCTGAAT CTAACGACGA 
CGGTGGATGG AGCTTCGGTG GTCTGATGAA AACTCTAGCC ACCAGATCCG 
AATCCGTGAT TGAAACCTAC CGACGAGATC TCGAAGAATT TGGCACAGGT 
TTGAAGAAAG AGATCGAGGT GGCTCAGGGA TCGCTTGGTA CGGTGGGACA 
TGCGATTGAT GAGCTTGGGA ACACGGTGCT AAAAGGTACG GCTGAGATTA 
TTGCTCAAGG TAAGGAAGCG ATTTTAGCCG CTGGTAATGA ATCTGATTCT 
TCTGATAACA ATAGTAGTCA GAGTTTTGGT CGTCGTGATA GCTTCAGTTC 
GAAACCATAT AGTCGTTTCG ATGCTCAGAT TCGTGCTGTT CAAGGAGATC 
TCAACACTTA CTGTGAAGAG CCTGAGGATT CAGATGATTA CAAAAAGTGG 
GAATCTGCGT TTTCTCTGGA TGGAAAAGCT GAGGAGATGG AGAAATTGTT 
GGAGGAAAAT GGTGATATGA AAGGAGTGTA TAAAAGGGTC GTTCCGAGTA 
TGGTTGATCA CGAGACCTTC TGGTTTAGGT ATTTCTATAG GGTTAACAAG 
CTCAAGCAAG CTGAGGATTT AAGGGCTAAT CTTGTGAAAC GAGCCATCTC 
TCTGGATGAT GAAGAAGAAT TGAGCTGGGA TATTGATGAT GAAGAGGAGA 
GCAGCGAGAA AGTTGTTGAA GCTACCAAAG ATGTTTCAAG GTTGAAACTT 
GAAGGGAATG ATGGTATGGG TGGTGGAGAT GTGAGTGAAA CTGTGAAAGA 
TGAAGTGGAA AGTACATATT CAGTGGCTAA AGTGAGCACG CAAGATGAAG 
TGACAAGTGC AGATTCAGTG ACTGAAGTGA GCAATGTTGG TTTGAAGACA 
GATAAAGATT CTGAGGAAAA GAAGGAGACT GATAGTGAGG AAGTTCCAGA 
AGAAAAATCA TTTGTTGATG CTGCTCCTCC TGCGTCTGAT GAGGCTCCAA 
TCCAAGATTC TGTCAAACCA ACATCTGATG AGGCTCCAAT CCAAGATTCT 
GTCAAACCAA AATCTGATGA GGCTGCTCCA TCCCAAGACT CAGCTAAACC 
AGATGTGGCT GCTTCTTCAT CAACTCAACA ACCATCTGAA GAGGATTTGG 
GATGGGACGA GATCGAGGAT ATGAGTAGCA TAGATGGTAA GGAAACGAGT 
CGGTCTGGTG GTAGTCCAAA CAGAGCTGAG CTGCGTAAAC GTCTGAGTGC 
TGCAGAGGAA GATGAAGATT TAAGTTGGGA CATTGATGAA GATGACGAAG 
AAGAATCATC ATCATCCAAA GCTTAATGTT AGTTTTAAAG TGGTGTGCTT 
TCTTACTTTT GCCAATCCTT TTACTTGTTT TTACAAGTTT CTGGCGCTTT 
GCCCCCATTC TTCAGTTGTT TTTCTCTTCA ACGTTTCTAT TTTACATTGA 
TTTGAAAATA TGTTTTTAAA TTTTACTTAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT1G03350.1 [+] show detail - BSD domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
ProfileScan BSD 17.896
HMMPfam BSD 5.6e-15
HMMSmart BSD 9.3e-19
HMMPanther SYNAPSE-ASSOCIATED PROTEIN 4.4e-66

See the detailed result >

AT1G03350.1

Model type
Protein coding
Short Description
BSD domain-containing protein
Computational Description
BSD domain-containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: BSD (InterPro:IPR005607); BEST Arabidopsis thaliana protein match is: BSD domain-containing protein (TAIR:AT4G13110.1); Has 10642 Blast hits to 5945 proteins in 665 species: Archae - 52; Bacteria - 3714; Metazoa - 2927; Fungi - 1314; Plants - 393; Viruses - 71; Other Eukaryotes - 2171 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-H08 introduced

  • F08628 - rosette leaf::increased width / sporophyte vegetative stage::decreased speed

Mutant lines with disrupted or induced

2 mutant lines found