Home
Full-length cDNAs
RAFL09-15-K06

RAFL09-15-K06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01907)

ATATCACTAT ATCACGTTAC AAAATTTAGA CAAAAAAATA AATATGGAGC 
TCGAGACCTC AGTTTATCGA CCAAACGTCG CCGTTTATGA TTCTCCGGAT 
GGTGTGGAGG TTCGAGGACG GTACGACCAA ATCTTCGCCA AGATTTTGAC 
GAGAGAAGCT CTTAGCTTTG TGGCTGAGTT ACAGAGAGAG TTTCGTGGCC 
ATGTGAAGTA TGCCATGGAG TGCCGGAGAG AGGCAAGACG GCGTTATAAC 
TCCGGTGCCG TTCCTGGGTT TGATCCTTCC ACTAAGTTCA TCAGAGACGG 
TGATTGGAGC TGTGCCTCCG TCCCTCCTGC CGTTGCTGAC CGGAGAGTTG 
AGATCACCGG TCCGGTCGAG AGGAAGATGA TCATCAACGC TCTTAACTCC 
GGAGCTAAAG TCTTTATGGC TGATTTCGAG GACGCTTTGT CTCCAAGCTG 
GGAGAATCTG ATGAGAGGGC ATGTGAACCT GAAAGATGCA GTGGATGGAT 
CCATTACGTT CCACGACAAG TCAAGGAACA GAGTTTACAA GCTCAACGAC 
CAAACCGCTA AGCTTTTTGT CCGGCCAAGA GGTTGGCATC TCCCGGAGGC 
TCACATCCTC ATCGACGGTG AACCCGCCAC TGGATGTCTT GTCGATTTTG 
GCCTTTACTT CTTCCACAAC TACGCCAAAT TTAGACAGAC TCAAGGTTCC 
GGTTTCGGTC CATTCTTCTA TCTCCCCAAA ATGGAACATT CTAGGGAAGC 
AAAGATATGG AACAGTGTTT TTGAGCGTGC TGAGAAGATG GCTGGGATAG 
AGAGAGGAAG CATTAGAGCA ACTGTGCTTA TCGAGACCCT CCCGGCTGTC 
TTCCAGATGA ATGAGATACT CTATGAACTA CGTGATCACT CAGTCGGTTT 
AAACTGTGGA AGATGGGATT ATATCTTCAG CTATGTCAAA ACCTTCCAAG 
CTCACCCTGA CCGGCTCTTA CCAGACCGTG TCCTAGTTGG CATGGGCCAG 
CATTTCATGA GAAGTTACTC TGATCTTCTC ATCCGTACTT GTCATAAGCG 
CGGTGTCCAC GCCATGGGTG GCATGGCGGC TCAGATTCCG ATAAGAGATG 
ACCCAAAAGC GAATGAGATG GCATTGGATC TAGTGAGGAA AGACAAGCTG 
AGAGAGGTAA GAGCAGGGCA TGATGGAACA TGGGCGGCTC ATCCAGGACT 
CATCCCAATC TGCATGGAAG CATTCACTGG TCACATGGGA AAAAGTCCAA 
ACCAAATCAA ATCAGTGAAG CGCGAGGACG CAGCCGCAAT AACAGAGGAA 
GATCTGCTTC AAATACCGCG AGGAGTGCGT ACACTCGAGG GTTTAAGGCT 
GAACACACGT GTAGGAATTC AATACTTAGC CGCATGGTTA ACAGGATCAG 
GATCTGTCCC ACTCTATAAC CTAATGGAAG ATGCTGCTAC GGCTGAGATA 
AGCCGTGTCC AGAATTGGCA ATGGATTAGG TATGGAGTGG AACTTGATGG 
AGACGGGCTT GGAGTTCGAG TGAGTAAAGA GTTGTTTGGG AGAGTTGTCG 
AAGAAGAGAT GGAAAGAATT GAGAAAGAAG TTGGGAAAGA CAAGTTTAAG 
AATGGAATGT ATAAGGAAGC TTGCAAGATG TTTACAAAGC AGTGTACTGC 
ACCTGAGCTT GATGATTTTC TTACACTTGC TGTTTATAAT CACATTGTAG 
CTCACTACCC TATCAATGTC TCAAGGCTCT GAAAGAAAGA AGATGAAGAA 
GGAAAGGGGA GAGAGGGGTT GAGATATGAG TTTGTGCTTT TGTTTCTTTG 
TGTCTGTTTC TCAAAATGTT ATTGTTCTTT CTGTATTTTG GTATATTGTA 
ATAAGCAAAA CTTGTTCTTT TATTTCCAGT AAGAAATAAA TGTTCTATAT 
CATCAAAAAA AAAAAAAAAA ACAAAAAAAA AAAAAAAA

Gene models with high sequence identity

AT5G03860.1 [+] show detail - malate synthase
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
HMMTigr	Malate synthase A	1.9e-277
HMMPIR	Malate synthase A	0
HMMPanther	Malate synthase	1.2e-283
HMMPanther	ISOCITRATE LYASE/MALATE SYNTHASE	1.2e-283
HMMPfam	Malate synthase	3e-221
Gene3D	Pyruvate/Phosphoenolpyruvate kinase, catalytic core	3e-08
superfamily	Malate synthase-like	9.9e-202
PatternScan	Malate synthase, conserved site	0

See the detailed result >

AT5G03860.1

Model type: Protein coding
Short Description: malate synthase
Curator Summary: Encodes a protein with malate synthase activity.
Computational Description: malate synthase (MLS); FUNCTIONS IN: malate synthase activity; INVOLVED IN: glyoxylate cycle; EXPRESSED IN: seed, leaf; CONTAINS InterPro DOMAIN/s: Malate synthase-like (InterPro:IPR011076), Malate synthase, conserved site (InterPro:IPR019830), Malate synthase A (InterPro:IPR006252), Malate synthase (InterPro:IPR001465); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-15-K06 introduced

F08502 - Specific phenotypes were NOT observed.
F15801 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::epinastic

Mutant lines with disrupted or induced

5 mutant lines found