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RAFL09-15-K24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01846)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-K24 - full reading 
ATTCCCACTT CCACACATAC ACATATACAA CAGAGCAAGA GAGTCAATCA 
AGTAGAGTGA AGATGGCAAC TAAACAAGAA GCTTTAGCCA TCGATTTCAT 
AAGCCAACAC CTTCTCACAG ACTTTGTTTC CATGGAAACT GATCACCCAT 
CTCTTTTTAC CAACCAACTT CACAACTTTC ACTCAGAAAC AGGCCCTAGA 
ACCATCACCA ACCAATCCCC TAAACCGAAT TCGACTCTTA ACCAGCGTAA 
ACCGCCCTTA CCGAATCTAT CCGTCTCGAG AACGGTTTCA ACAAAGACAG 
AGAAAGAGGA AGAAGAGAGG CACTACAGGG GAGTGAGACG AAGACCGTGG 
GGAAAATACG CGGCGGAGAT TAGGGATCCG AACAAAAAGG GTTGTAGGAT 
CTGGCTTGGG ACTTACGACA CTGCCGTGGA AGCTGGAAGA GCTTATGACC 
AAGCGGCGTT TCAATTACGT GGAAGAAAAG CAATCTTGAA TTTCCCTCTC 
GATGTTAGGG TTACGTCAGA AACTTGTTCT GGGGAAGGAG TTATCGGATT 
AGGGAAACGA AAGCGAGATA AGGGTTCTCC GCCGGAAGAG GAGAAGGCGG 
CTAGGGTTAA AGTGGAGGAA GAAGAGAGTA ATACGTCGGA GACGACGGAG 
GCTGAGGTTG AGCCGGTGGT ACCATTGACG TCGTCAAGTT GGATGGGGTT 
TTGGGATGTG GGAGCAGGAG ATGGTATTTT CAGTATTCCT CCGTTATCTC 
CGACGTCTCC CAACTTTTCC GTTATCTCCG TCACTTAAAA CTTCGGAAAA 
GTCAACGTAC GATGACGTTT TCACTTGCGT CACTCTCATG ATTTCATTTA 
TTCTTGTATA ATATAAAGGT AGCGGTAGTG TGCAAATATC AAATAAGTAG 
TTTAATTAGT ACCAATCATT TTATTCATTA TTTTTTTTAG TAGAATATTT 
GGATGTTGAA AATATAAATT TAATTTTGTA TTTGTTGATG TTATAAATTT 
ATTGATTGTA TAAACATTCT TAGTCACCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT5G61600.1 [+] show detail - ethylene response factor 104
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-13
FPrintScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 3.4e-13
superfamily DNA-binding, integrase-type 3e-24
ProfileScan Pathogenesis-related transcriptional factor/ERF, DNA-binding 23.894
HMMPfam Pathogenesis-related transcriptional factor/ERF, DNA-binding 9.1e-16
HMMSmart Pathogenesis-related transcriptional factor/ERF, DNA-binding 4.1e-34
Gene3D Pathogenesis-related transcriptional factor/ERF, DNA-binding 1e-24

See the detailed result >

AT5G61600.1

Model type
Protein coding
Short Description
ethylene response factor 104
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-3 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 18 members in this subfamily including ATERF-1, ATERF-2, AND ATERF-5.
Computational Description
ethylene response factor 104 (ERF104); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT5G51190.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-K24 introduced

  • F11145 - rosette leaf::decreased size / cauline leaf::decreased size / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / rosette leaf::abnormal / rosette leaf::decreased width / rosette leaf::present in greater numbers in organism / rosette leaf::abnormal / cauline leaf::decreased width / whole plant::decreased height / stem::present in greater numbers in organism
  • F24622 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found