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  3. RAFL09-15-M21

RAFL09-15-M21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01837)

full reading [+] show sequence

Nucleotide sequence: RAFL09-15-M21 - full reading 
ACTCTCCATT TTTCAATATT GCTCAAATCT CAATCTTTCT CTCCTGCGTT 
TTAATTTCTC TCGGATTGAA ATCATCCATG GCTGCCACCG CAACCGAGAA 
GCTCCCTCAG CTCAAATCCG CCGTCGATGG ACTTACTGAG ATGAGCGAGA 
ATGAGAAGAG TGGATTCATC AACCTCGTTT CACGTTACCT CAGTGGTGAA 
GCCCAGCACA TTGAATGGAG CAAGATCCAG ACACCTACTG ATGAAATTGT 
TGTTCCTTAT GATAAAATGG CTAACGTCTC TGAAGATGCT TCCGAGACCA 
AATATCTGTT GGACAAGCTT GTTGTGCTGA AGCTTAATGG AGGTTTGGGA 
ACCACAATGG GATGCACTGG TCCAAAATCG GTTATTGAAG TTCGTGATGG 
TTTGACATTT CTTGACCTGA TTGTTATCCA GATTGAGAAT CTCAACAACA 
AGTATAACTG CAAGGTTCCT TTGGTTCTTA TGAACTCATT CAATACACAT 
GATGACACAC AAAAGATTGT GGAAAAATAC ACCAAGTCAA ATGTTGATAT 
TCACACTTTT AATCAGAGCA AGTATCCTCG TGTTGTTGCT GATGAGTTTG 
TGCCGTGGCC AAGCAAAGGA AAGACTGACA AGGATGGATG GTATCCTCCC 
GGTCACGGTG ATGTATTCCC ATCTCTCATG AACAGTGGCA AGCTTGATGC 
GTTCTTATCA CAGGGTAAGG AGTATGTGTT CATCGCCAAC TCAGACAACT 
TGGGCGCAAT CGTTGACTTA AAAATCTTGA AGCACCTGAT CCAGAACAAA 
AATGAGTACT GTATGGAGGT TACACCCAAA ACACTAGCTG ATGTAAAGGG 
AGGAACTCTC ATTTCTTACG AAGGAAAAGT ACAGCTTTTG GAGATTGCTC 
AGGTTCCTGA TGAACATGTA AATGAATTCA AATCAATTGA GAAATTCAAG 
ATTTTCAACA CCAACAACCT ATGGGTGAAC TTGAAAGCCA TCAAAAAGCT 
TGTGGAAGCT GATGCACTTA AAATGGAGAT CATCCCAAAC CCGAAGGAAG 
TTGACGGAGT CAAAGTTCTT CAGCTGGAAA CTGCAGCTGG TGCTGCGATA 
AGGTTTTTTG ATAATGCAAT TGGTGTGAAT GTACCTCGGT CACGGTTCTT 
GCCAGTGAAG GCAACTTCAG ACTTGCTTCT TGTTCAATCG GATCTGTACA 
CACTCGTAGA TGGCTTTGTC ACAAGAAACA AAGCTAGAAC AAACCCCACA 
AACCCAGCGA TCGAGTTGGG ACCCGAATTC AAAAAGGTAG CGAGTTTCCT 
TAGCCGGTTC AAGTCCATCC CGAGTATAGT TGAGCTCGAT AGTCTTAAGG 
TCTCAGGTGA TGTTTGGTTT GGCTCCGGCG TTGTTCTCAA GGGCAAAGTG 
ACAGTAAAGG CAAACGCCGG GACTAAACTT GAAATCCCTG ACAATGCCGT 
GCTCGAGAAT AAGGACATCA ACGGTCCAGA GGATCTGTGA AAAAACTTAA 
AAGACTTACT TTGATGCGTC TTCTTCTGTT TTTCACTTCT CTTGTAAATG 
AGAGCACTTT TGATATGAAA CCTCTTTCAT GTGAAAAGAC ACAAGAATAA 
CGAGAGTTGA ACAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G17310.2 [+] show detail - UDP-glucose pyrophosphorylase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam UTP--glucose-1-phosphate uridylyltransferase 3e-186
HMMPIR UTP--glucose-1-phosphate uridylyltransferase, subgroup 8.5e-279
Gene3D no description 8.9e-62
HMMPanther UTP-GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE 2 1.4e-265
HMMPanther UTP--glucose-1-phosphate uridylyltransferase 1.4e-265
superfamily Nucleotide-diphospho-sugar transferases 4.3e-124

See the detailed result >

AT5G17310.2

Model type
Protein coding
Short Description
UDP-glucose pyrophosphorylase 2
Computational Description
UDP-glucose pyrophosphorylase 2 (UGP2); FUNCTIONS IN: UTP:glucose-1-phosphate uridylyltransferase activity, nucleotidyltransferase activity; INVOLVED IN: response to cadmium ion, callose deposition in cell wall, response to salt stress, metabolic process, pollen development; LOCATED IN: plasma membrane; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: UTP--glucose-1-phosphate uridylyltransferase, subgroup (InterPro:IPR016267), UTP--glucose-1-phosphate uridylyltransferase (InterPro:IPR002618); BEST Arabidopsis thaliana protein match is: UDP-GLUCOSE PYROPHOSPHORYLASE 1 (TAIR:AT3G03250.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-15-M21 introduced

  • F16813 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found