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  3. RAFL09-16-D24

RAFL09-16-D24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01889)

full reading [+] show sequence

Nucleotide sequence: RAFL09-16-D24 - full reading 
GCAAAGAACA AACCAGTGAA GGAAAAATGG AGATATGGTT ACTTATCTTG 
GGCTCTCTCT TCCTCTCTCT CCTTCTCAAT CTCCTCTTCT TTCGCCTCCG 
TGACTCCTCC TCTCTTCCGT TACCACCTGA CCCTAACTAT TTCCCTTTCA 
TTGGAACCAT CCAATGGCTC CGGCAAGGCT TAGGTGGACT CAACAACTAT 
CTCCGCTCCG TCCACCACCG TCTCGGTCCC ATCATCACCC TTCGCATCAC 
TTCCCGCCCC TCTATATTCG TCGCCGATCG TTCTCTTGCT CACCAGGCTC 
TCGTTTTGAA CGGTGCCGTT TTCGCCGATC GTCCACCGGC AGCTCCGATC 
AGTAAGATTA TTTCGAGTAA CCAACATAAC ATCAGCTCTT GTTTATATGG 
AGCCACGTGG CGTCTTCTTC GCCGGAATCT CACTTCTGAG ATTCTTCACC 
CCTCGCGCGT GAGATCTTAC TCTCACGCGC GGCGTTGGGT TCTTGAGATT 
CTTTTTGATC GATTTGGTAA AAACAGAGGA GAAGAACCGA TTGTTGTTGT 
TGATCATCTT CACTATGCGA TGTTTGCGCT TCTTGTTCTC ATGTGTTTTG 
GAGATAAGCT TGATGAGAAG CAAATCAAAC AAGTGGAATA TGTTCAGAGA 
CGACAGCTTC TTGGCTTCTC GAGATTCAAT ATTCTCAATC TCTGGCCTAA 
GTTTACTAAA TTGATTTTGC GAAAGAGATG GGAAGAGTTT TTCCAGATGC 
GGAGAGAGCA GCATGACGTT TTGCTTCCGT TGATTCGTGC TCGGAGAAAG 
ATTGTTGAAG AGAGAAAGAA TAGATCATCA GAGGAAGAAG AAGACAACAA 
AGAGTATGTA CAATCATACG TTGATACTCT GCTTGAGCTG GAGCTTCCAG 
ATGAGAAGAG GAAGCTGAAC GAGGATGAGA TTGTGAGTTT GTGTTCGGAG 
TTTCTCAACG GTGGGACTGA TACAACGGCC ACCGCGTTGC AATGGATCAT 
GGCGAACTTG GTGAAAAACC CGGATATTCA GAAGAGGTTA TACGAGGAGA 
TCAAAAGCGT AGTTGGGGAA GAAGCAAATG AAGTGGAGGA AGAAGACGCG 
CAAAAGATGC CGTATCTAGA GGCAGTGGTG ATGGAGGGTC TCCGGAGACA 
TCCTCCGGGA CATTTTGTGC TCCCCCACAG TGTCACTGAG GACACTGTGT 
TAGGAGGATA CAAAGTGCCG AAGAATGGGA CAATTAATTT CATGGTGGCA 
GAGATAGGGA GGGATCCAAA AGTGTGGGAG GAACCAATGG CGTTTAAGCC 
AGAGAGGTTT ATGGAAGAAG CGGTGGACAT AACCGGAAGC AGAGGGATAA 
AGATGATGCC GTTCGGAGCG GGTAGAAGGA TTTGTCCAGG GATTGGGCTA 
GCGATGCTGC ATCTGGAGTA CTATGTGGCG AATATGGTGA GGGAGTTTGA 
CTGGAAGGAG GTCCAAGGTC ATGAAGTGGA CTTGACGGAG AAGCTCGAGT 
TTACCGTAGT CATGAAGCAT CCGCTTAAGG CCCTTGCTGT TCCTAGGAGA 
AGTCACTAGT TGTCTACTTC TTAAACTTCA GTTTAGTATT CACCAAAGAC 
TAGGTGATGT ATGAAGAATT GAAGTTATGG GCATTTTGTT AGCTGAAGTC 
AACTATGGAA CTATCTTTTT TATTAAAGTA CATTTTGTAC CTTGGAATAA 
ATGATAGAAA CAACAATCCT TTTATTTTGT ATTAAAAGGA ATCTTTTATG 
ACGAGTGTTT TTACAAGAAA GGTACATAGG TCTAGAAAAG TGTGGGATTT 
CTAGTGTTTA GTGACTAGAT GATTTAGAAA AGTGTGGGAT TTTGATGGTT 
GTTGATACTT TTGTTGGGAG AAATCGAAAG AGTAAAAGCC AAAAAAAAAA 
AAAAA

Gene models with high sequence identity

  1. AT1G64950.1 [+] show detail - cytochrome P450, family 89, subfamily A, polypeptide 5
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
superfamily Cytochrome P450 2.7e-118
Gene3D Cytochrome P450 1.7e-111
PatternScan Cytochrome P450, conserved site 0
HMMPanther CYTOCHROME P450 SUBFAMILY 79A 0
HMMPanther Cytochrome P450 0
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, E-class, group I 1.4e-40
FPrintScan Cytochrome P450, C-terminal 2.6e-11
FPrintScan Cytochrome P450, C-terminal 2.6e-11
FPrintScan Cytochrome P450, C-terminal 2.6e-11
FPrintScan Cytochrome P450, C-terminal 2.6e-11
HMMPfam Cytochrome P450 5.4e-98

See the detailed result >

AT1G64950.1

Model type
Protein coding
Short Description
cytochrome P450, family 89, subfamily A, polypeptide 5
Curator Summary
member of CYP89A
Computational Description
"cytochrome P450, family 89, subfamily A, polypeptide 5" (CYP89A5); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: callus; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, conserved site (InterPro:IPR017972), Cytochrome P450, E-class, group I (InterPro:IPR002401); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 87, subfamily A, polypeptide 6 (TAIR:AT1G64940.1); Has 33837 Blast hits to 33688 proteins in 1718 species: Archae - 63; Bacteria - 4127; Metazoa - 11783; Fungi - 7185; Plants - 9256; Viruses - 3; Other Eukaryotes - 1420 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-16-D24 introduced

  • F03839 - Specific phenotypes were NOT observed.
  • F10030 - seed::increased size / seed::increased length
  • F11508 - Specific phenotypes were NOT observed.
  • F18314 - Specific phenotypes were NOT observed.
  • F30135 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / whole plant::decreased height / fruit::decreased thickness / stem::abnormal / stem::abnormal / rosette leaf::abnormal / rosette leaf::abnormal

Mutant lines with disrupted or induced

11 mutant lines found