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  3. RAFL09-16-M04

RAFL09-16-M04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01912)

full reading [+] show sequence

Nucleotide sequence: RAFL09-16-M04 - full reading 
ATCTCTACAC TTCTCATCTC TCAATCCCAT TCGCTTATTA TTTATCCATA 
TGGGAAAGGT TCTTGAGAAG GAGGCGTTTG GATTGGCTGC GAAAGACGAA 
TCGGGAATTC TTTCGCCTTT CAGTTTCTCT AGAAGGGCGA CGGGTGAAAA 
GGATGTGAGG TTCAAAGTCT TGTTCTGTGG AATTTGCCAC ACTGATCTGA 
GTATGGCCAA AAACGAATGG GGGTTAACTA CTTATCCTCT TGTCCCTGGG 
CATGAGATTG TGGGCGTGGT GACTGAAGTT GGAGCCAAAG TGAAAAAATT 
CAACGCTGGA GACAAAGTCG GAGTTGGCTA TATGGCCGGC TCGTGCAGGT 
CATGTGACAG CTGCAATGAT GGCGACGAGA ACTACTGTCC AAAGATGATC 
TTAACGTCCG GAGCCAAAAA CTTTGACGAT ACCATGACCC ATGGTGGATA 
CTCCGACCAC ATGGTGTGTG CTGAGGATTT CATCATCCGT ATTCCTGACA 
ATCTCCCATT AGACGGTGCC GCACCACTAC TCTGCGCCGG GGTCACGGTC 
TACTCCCCCA TGAAGTATCA CGGGCTCGAC AAGCCCGGTA TGCACATCGG 
TGTGGTGGGA CTAGGCGGTT TGGGCCATGT AGCAGTGAAA TTTGCTAAGG 
CTATGGGTAC TAAAGTTACG GTTATTAGTA CTTCGGAGCG TAAGAGAGAC 
GAGGCCGTTA CTCGGCTTGG TGCGGATGCC TTCTTGGTGA GCCGTGACCC 
GAAACAAATG AAGGATGCAA TGGGGACTAT GGATGGTATC ATTGATACCG 
TATCTGCGAC CCATCCACTT CTTCCGCTGC TTGGTTTGCT TAAAAATAAG 
GGAAAACTTG TTATGGTTGG TGCACCAGCA GAACCGCTCG AGCTTCCTGT 
TTTTCCTCTC ATCTTTGGGC GGAAGATGGT GGTGGGTAGT ATGGTAGGAG 
GTATAAAGGA GACGCAAGAG ATGGTGGATT TGGCTGGAAA ACACAACATC 
ACGGCGGATA TTGAGCTCAT CTCTGCGGAT TATGTCAACA CCGCCATGGA 
ACGGCTTGCA AAGGCTGACG TTAAGTACCG ATTTGTGATT GATGTTGCCA 
ACACGATGAA GCCAACTCCT TAACTAGAAA GCTTAAGAAT TGAATATCCC 
CAAAGCTTTT TTCATGTTTT TGCTTGTTTG TTTGATGTTG TTTGCTGGCG 
ACTTTGTGTG TAGTATTACC ACACTGCATG TACTTTATCA GTTGAATAAA 
CTTGAATATT GTATTTAATA AGCTATCTAC ATTAGATTTT GGGGAAGTTT 
GATTAAAATT TATTCCTAAA AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT4G37980.1 [+] show detail - elicitor-activated gene 3-1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily GroES-like 5.8e-48
superfamily NAD(P)-binding domain 2.1e-42
PatternScan Alcohol dehydrogenase, zinc-containing, conserved site 0
HMMPanther ZINC-TYPE ALCOHOL DEHYDROGENASE-RELATED 3.9e-123
HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 3.9e-123
HMMPfam Alcohol dehydrogenase GroES-like 2e-27
HMMPfam Alcohol dehydrogenase, zinc-binding 7.4e-23
HMMSmart Polyketide synthase, enoylreductase 5.4e-05
Gene3D no description 3.3e-57

See the detailed result >

AT4G37980.1

Model type
Protein coding
Short Description
elicitor-activated gene 3-1
Computational Description
elicitor-activated gene 3-1 (ELI3-1); FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: response to bacterium, plant-type hypersensitive response; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Polyketide synthase, enoylreductase (InterPro:IPR020843), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, zinc-containing, conserved site (InterPro:IPR002328), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: elicitor-activated gene 3-2 (TAIR:AT4G37990.1); Has 39128 Blast hits to 39104 proteins in 3053 species: Archae - 813; Bacteria - 26065; Metazoa - 1241; Fungi - 2911; Plants - 3099; Viruses - 3; Other Eukaryotes - 4996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-16-M04 introduced

  • F11038 - Specific phenotypes were NOT observed.
  • F28042 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found