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Full-length cDNAs
RAFL09-16-N06

RAFL09-16-N06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01929)

AAAACGTGTC CAAGTATCTT TTGCATCTTC AAAGCAAAAG AAAAACATCA 
ATTTTTTCCA AATTTTTATC ATTTTCTCAA TCGTCAGTAC TCAGTATTTA 
GAGTCAAAAA TCTCGTCGAA GAATTTCTTT TGGAGGAAGC GTTATTTTTG 
CTAAAGGTCA AACAAAACAT TGGATTTCGA GAACTGAAGA ACAAGTTTTG 
ATGGGTTCTC TAATGCAATC TGAACCAGAG ATGGAGAAAA AACCGATAGG 
GATACGATTC TTGGAACGTA TCAAAGGCTC AAAGCTCTCT TACAGTGCTT 
ATCAAGCCAT AGTGTTGATC GTGACGTTTC TCGCTTACGC TAGCTATCAC 
GCTGCAAGAA AAACAACAAG TATTGTCAAA AGTGCTCTTG ATCCTCAATC 
TCCAGATACA GGACTAAACT CACTTCTTTT GAGATTTACT TCGTTTGGTT 
CCTCTGTAAA AGAAGAAGGT GGTTGGGCTC CTTTCAATGG TCCTGATGGT 
ACGGTTTTGC TCGGTGAGAT CGATGTTGCG TTTCTTGCGG TTTACGCTTT 
CGGAATGTAT TTCGCTGGAC ATTTGGGGGA TAGGATGAAT CTTAGGATCT 
TCTTGACTGT TGGAATGATA GGAACTGGAT TGTTTACTTC TCTGTTTGGA 
GTTGGTTATT GGGGTAACAT TCATAGCTTT TACTATTTCT TGATAATGCA 
AATGTTAGCT GGTTTGTTTC AATCTTCGGG TTGGCCATCG GTTGTTGCTG 
TTGTTGGAAA CTGGTTTAAC AAGAAGAAGA GAGGTTTGAT CATGGGGATA 
TGGAATGCTC ATACTTCTGT TGGGAACATT ACTGGCTCGT TGATCGCTGC 
TGCTATGTTG AGATATGGTT GGGGATGGTC TTTTGTTGTT CCTGGTGTTA 
TCATTGTGGT GATTGGTTTG GTGAATTACG CTTTCTTGCC TGTTAGTCCA 
GAGAATGTTG GAGCAGAGCG AGACGAGGTT CTTGATTCTT CGTCTGAGAA 
AATCGGAAAC TCTGTTAATG AGCCGTTACT ATTGAGCTCG TCGGATTCGG 
AAACCGATGA CAAGAAACGA GCTGTTGGAT TCATTGAAGC GTGGAGGATT 
CCCGGAGTTG CGCCTTTCGC GCTCTGTCTC TTCTTTGCTA AGTTGGTCGC 
TTACACTTTC CTCTACTGGC TCCCATTTTA CGTTAGCCAT ACAGCGATTG 
AAGGCGAATA TTTATCGGAC GAAACAGCGG GAAATCTTTC GACAATGTTC 
GATGTAGGAG GTGTGGTTGG TGGAATCATG GCTGGTTACA TTTCAGACCG 
AATTGGTGCA AGAGCTATTA CGGCTGCGAG TTTCATGTAC TGCTCAATTC 
CAGCTTTGTT CTTCTACCGT AGCTACGGAC ATGTATCGTT ATTAGCCAAC 
GCGTCTCTCA TGTTCTTGAC CGGGATGTTG GTTAACGGTC CTTACGCTTT 
GATTACAACG GCAGTTTCAG CTGATCTTGG AACACACAGC TCGTTGAAAG 
GAAACTCGAG AGCTTTGGCT ACGGTAACGG CTATTATCGA TGGAACGGGA 
TCCGTTGGAG CGGCGGTCGG ACCCTTACTA ACGGGTTACA TATCGTCGAG 
GGGTAGCTGG ACCGCGGTTT TCACAATGTT GATGGGAGCT GCGTTTGTGG 
CTGGACTATT GTTGACGAGG CTGGTAATGG CCGAAGTAGC GGAGAAGATA 
GCTGAGTCTA GGCCATCGGA AGAATGTAGA TCTCCGGTGG ACTATGTCCA 
AGATCATGTG ATGGAAGTGT GATCACCAAC TTTGATCGCC ATTTTTTTAG 
TAGCGTTTTA AGTTTTGTTT ATTTTTTCAT AGGGAAGATT TCGGACCAGA 
GTTTAGGTCT GTGGGAATTT GTAAACATGT AATCTGTATT GTGATGTACA 
TTGTACATAA TTACTATATA TCGATTTGAC CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

AT3G47420.1 [+] show detail - phosphate starvation-induced gene 3
E-value: 0; Score: 100.00

InterPro Scan Digest

Program	Description	E-value
ProfileScan	MFS	27.563
HMMPanther	SOLUTE CARRIER FAMILY 37 MEMBER 2 (GLYCEROL-3	0
HMMPanther	SODIUM-DEPENDENT PHOSPHATE TRANSPORTERS	0
superfamily	Major facilitator superfamily, general substrate transporter	2.3e-65
HMMPfam	Major facilitator superfamily MFS-1	5.9e-39

See the detailed result >

AT3G47420.1

Model type: Protein coding
Short Description: phosphate starvation-induced gene 3
Curator Summary: Encodes a Pi starvation-responsive protein AtPS3.
Computational Description: phosphate starvation-induced gene 3 (PS3); FUNCTIONS IN: sugar:hydrogen symporter activity; INVOLVED IN: carbohydrate transport, transmembrane transport; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G30560.1); Has 26325 Blast hits to 26083 proteins in 2250 species: Archae - 498; Bacteria - 20836; Metazoa - 940; Fungi - 2597; Plants - 303; Viruses - 0; Other Eukaryotes - 1151 (source: NCBI BLink).
Link: InterPro Scan - TAIR

Mutant lines with RAFL09-16-N06 introduced

F15302 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found