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  3. RAFL09-16-O21

RAFL09-16-O21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01859)

full reading [+] show sequence

Nucleotide sequence: RAFL09-16-O21 - full reading 
AACCAGAAAG AAAAAAAAAA TGAAGAAGAG TATCGAAACT CCGTTATTGT 
TGAACACCAA ACAATCACAA GACGAAGATA AAGAAAAAAT AAGATGGGAG 
AAGATGAAGA AAGTTGCTTC AATGGCTGCT CCAATGGTCG CCGTGAACAT 
GTCTCAATAC CTTCTTCAAG CAACTTCTAC AATGATCGTC GGTCACCGGA 
GCGAACTCGC TCTCGCCGGA ATCGCTCTAG GAAGCTCCTT TGCTAATGTT 
ACCGGCTTTG GTGTTCTTTT TGGACTTTCA GGTTCATTGG AAACACTATG 
TGGTCAAGCA TATGGAGCAA AACAATATCA CAAGCTTGGA TCTTACACTT 
TCACTTCAAT AGTTTTCCTT TTGATTATCT CTGTTCCGAT TTCGATTCTT 
TGGATGTTCA TGAACCAGAT CTTGCTGTTG CTTCATCAAG ATCCTCAAAT 
AGCAGAGTTA GCTGGTGTGT ACTGTCTCTG GCTGGTACCA GCTTTATTCG 
GTTACTCTGT TCTCGAGTCG TTGGTTCGAT ATTTTCAGTC ACAAAGCTTG 
ATTTATCCAA TGGTCTTGAG CTCTCTAGCT GCTCTGTCTT TCCATGTTCC 
TCTCTGTTGG CTAATGGTTC ATAAATTTGA TTTTGGAGCC AAAGGAGCGG 
CTGCGTCTAT CGGTATCTCT TACTGGCTCA ACGCGGTTTT TCTTTGGGTT 
TATATGAAAC GCTCTAGTCG TTGTGTCGAA ACGCGGATTT ATATGTCCAA 
GGATGTTTTT GTTCATACAA ATATCTTCTT TCAATTTGCC ATTCCTTCTG 
CAATGATGTT TTGCCTTGAG TGGTTAGCTT TCGAGGTCAT TACTTTGCTG 
TCTGGTCTTC TACCCAACTC AAAGCTCGAA ACATCGGTTA TTTCGATTTG 
CCTCACGACC TCTTCATTGC ATTACAATCT AGTAAATGGA ATTGGTGATG 
CAGCAAGCAC CAATGTGGCT AATGAGCTAG GAGCTGGGAA TCCGCGAGGG 
GCTCGTGATT CTGCTGCGGC TGCAATCATA ATTGCAGCTG TTGAGTCAGT 
TATTGTGAGC TCTAGTCTGT TCTTGTCTCG CAGTGTGTGG CCTTATGCAT 
ATAGCAATGT GGAGGAAGTA ATTAGTTATG TGACTGATAT CACTCCTATT 
CTTTGTATCT CAATCCTCAT GGACAGCTTC TTGACCGTCC TCTCCGGGAT 
TGTGAGAGGA ACAGGGTGGC AAAAAATTGG AGCTTATGTG AACATAACCT 
CTTATTATGT CATTGGTATT CCTGTTGGAC TTCTATTGTG TTTTCATCTT 
CACTTCAATG GGAAAGGACT TTGGGCTGGT TTAGTCACAG GATCAACATT 
ACAAACTCTA ATCCTATTTC TTGTTATTGG ATTTACCAAT TGGAGCAAAG 
AGGCAATTAA GGCTAGGGAG AGAATTGGTG ATGAGAAAGT TTGGAGACAT 
GACTCATTGC TTAATTGAAG AAAAAAAGAA ATACAAACTT TTGGGGGATT 
TTGATTGCTT CTTTTTTTGT GTGTGTTTGT GCAATAACCT TCAGTTGATT 
GTAATTTATA TTGAAAGTAC ATTATAGTCT TTCATATGAT ATTAGAGTGT 
AAGAAAGTTT GAAAATATAT CTCAGCAAAA AAAAAAAAAA AA

Gene models with high sequence identity

  1. AT1G66760.2 [+] show detail - MATE efflux family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMTigr Multi antimicrobial extrusion protein MatE 1.3e-92
HMMPfam Multi antimicrobial extrusion protein MatE 3e-30
HMMPfam Multi antimicrobial extrusion protein MatE 4.1e-32
HMMPanther MATE family transporter related protein 7.7e-278
HMMPanther Multi antimicrobial extrusion protein MatE 7.7e-278

See the detailed result >

AT1G66760.2

Model type
Protein coding
Short Description
MATE efflux family protein
Computational Description
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: response to wounding; LOCATED IN: membrane; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: MATE family transporter related protein (InterPro:IPR015521), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT1G66780.1); Has 11176 Blast hits to 10988 proteins in 2036 species: Archae - 239; Bacteria - 8105; Metazoa - 148; Fungi - 328; Plants - 1324; Viruses - 0; Other Eukaryotes - 1032 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-16-O21 introduced

  • F10015 - Specific phenotypes were NOT observed.
  • F20043 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found