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  3. RAFL09-16-P08

RAFL09-16-P08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02001)

full reading [+] show sequence

Nucleotide sequence: RAFL09-16-P08 - full reading 
AATCATTTGA TTATTTCCTC CTCTCCGTAT CTGTGTCTCT CTTCTCTTGA 
TCTTTTAGTG TTCTTGCTTT GTCGCTTCAA CGCTTAAGTT TGGATTTGTG 
TGAGTCTGCA TAATCATGGC GAGGAAGATG CTTGTTGATG GTGAGATTGA 
TAAGGTGGCG GCTGATGAAG CCAACGCGAC GCACTATGAT TTTGATTTGT 
TTGTCATCGG TGCCGGGAGT GGCGGTGTTC GTGCTGCTAG GTTTTCGGCT 
AATCATGGCG CTAAGGTTGG TATTTGTGAG CTTCCATTTC ACCCTATTAG 
CTCTGAGGAG ATTGGAGGCG TTGGTGGAAC CTGTGTTATC CGTGGTTGTG 
TTCCTAAAAA GATTCTCGTC TATGGAGCTA CTTACGGTGG TGAACTTGAG 
GATGCTAAAA ATTATGGGTG GGAAATAAAT GAGAAAGTCG ACTTCACATG 
GAAGAAGCTT TTGCAAAAGA AGACTGATGA GATACTAAGA CTGAATAATA 
TCTACAAGCG GTTATTGGCA AATGCTGCGG TGAAATTGTA TGAAGGTGAA 
GGAAGAGTAG TTGGTCCCAA CGAAGTGGAG GTGAGACAAA TAGATGGCGC 
AAAAATAAGT TATACCGCAA AGCACATATT GATTGCCACT GGCAGTCGGG 
CGCAAAAGCC TAATATTCCT GGACATGAGC TGGCTATTAC ATCTGATGAA 
GCTTTGAGCT TGGAAGAATT TCCCAAGCGT GCTATAGTGC TTGGAGGAGG 
GTATATTGCT GTGGAGTTTG CATCAATATG GCGTGGAATG GGTGCTACTG 
TAGATTTATT CTTCAGGAAG GAACTTCCGC TAAGGGGTTT TGATGACGAA 
ATGAGGGCAC TAGTTGCTAG AAATCTTGAA GGAAGGGGCG TTAATCTGCA 
TCCACAAACA AGTTTGACTC AGTTGACAAA AACAGACCAG GGGATCAAAG 
TCATATCGTC CCATGGGGAG GAATTCGTGG CAGATGTCGT CCTATTTGCT 
ACTGGCAGAA GTCCTAATAC CAAAAGATTG AATTTAGAAG CTGTTGGTGT 
TGAACTTGAT CAGGCTGGAG CTGTGAAGGT TGACGAGTAT TCACGAACTA 
ATATACCTAG CATATGGGCT GTAGGAGATG CCACAAACCG AATTAACCTT 
ACACCTGTTG CGTTAATGGA GGCCACCTGT TTTGCGAACA CTGCTTTTGG 
TGGAAAGCCT ACTAAAGCAG AATACAGCAA TGTCGCCTGT GCTGTATTTT 
GCATACCACC ACTAGCTGTA GTGGGTCTCA GCGAAGAAGA AGCAGTAGAA 
CAAGCAACCG GTGATATTCT GGTCTTCACC TCAGGCTTTA ATCCAATGAA 
GAACACCATT TCTGGACGCC AGGAAAAGAC ATTGATGAAG CTAATAGTTG 
ATGAGAAGAG TGATAAGGTT ATTGGAGCAT CCATGTGCGG TCCTGATGCA 
GCTGAGATCA TGCAGGGGAT TGCAATTGCG CTCAAGTGTG GAGCAACCAA 
AGCACAATTT GATAGCACGG TTGGGATACA TCCATCTTCT GCAGAGGAAT 
TTGTGACAAT GCGCAGTGTG ACCAGACGCA TTGCCCACAA ACCCAAACCT 
AAGACAAATC TATGAACCGC AAAATATAAA GAGCTATATA GCATGAAAAC 
TCGGTACACT TAATTTGATC AAAGAGTCAG ACAACGATGA GTTTAATCAT 
ACTCGTGTCC CAATAAAGGA TTTGTAATTT TTGTTTGTTT GTATGATGCT 
TCTCTTCTTA CTTACTTGAG AAAACATCAA GGTTTCTTCT CTTATTGCTT 
AGTGGAACTT TATTACAAAG AATTATTCTA CGAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT3G24170.1 [+] show detail - glutathione-disulfide reductase
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
PatternScan Pyridine nucleotide-disulphide oxidoreductase, class I, active site 0
superfamily FAD/NAD(P)-binding domain 1.5e-66
superfamily FAD/NAD-linked reductase, dimerisation 1.6e-31
HMMTigr Glutathione-disulphide reductase 0
HMMPfam FAD-dependent pyridine nucleotide-disulphide oxidoreductase 5.9e-46
HMMPfam Pyridine nucleotide-disulphide oxidoreductase, dimerisation 6.7e-30
HMMPfam Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region 1.5e-16
HMMPanther GLUTATHIONE REDUCTASE 1.2e-260
HMMPanther DISULFIDE OXIDOREDUCTASE 1.2e-260
Gene3D no description 1e-65
Gene3D Pyridine nucleotide-disulphide oxidoreductase, dimerisation 1.7e-31
Coil coiled-coil 0
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan PNDRDTASEI 3.2e-61
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
FPrintScan FAD-dependent pyridine nucleotide-disulphide oxidoreductase 2.5e-30
FPrintScan Mercuric reductase 0.000034
FPrintScan Mercuric reductase 0.000034
FPrintScan Mercuric reductase 0.000034

See the detailed result >

AT3G24170.1

Model type
Protein coding
Short Description
glutathione-disulfide reductase
Curator Summary
Encodes a cytosolic glutathione reductase.
Computational Description
glutathione-disulfide reductase (GR1); FUNCTIONS IN: NADP or NADPH binding, glutathione-disulfide reductase activity, oxidoreductase activity, FAD binding; INVOLVED IN: oxidation reduction, glutathione metabolic process, cell redox homeostasis; LOCATED IN: peroxisome; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, class I, active site (InterPro:IPR012999), Pyridine nucleotide-disulphide oxidoreductase, dimerisation (InterPro:IPR004099), FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), Mercuric reductase (InterPro:IPR000815), Glutathione-disulphide reductase (InterPro:IPR006324), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: glutathione reductase (TAIR:AT3G54660.1); Has 36408 Blast hits to 36344 proteins in 3180 species: Archae - 854; Bacteria - 26624; Metazoa - 911; Fungi - 472; Plants - 667; Viruses - 0; Other Eukaryotes - 6880 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-16-P08 introduced

  • F00825 - Specific phenotypes were NOT observed.
  • F06825 - seed::increased length / seed::decreased width
  • F10551 - rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / stem::decreased thickness / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::abnormal
  • F11745 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found