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  3. RAFL09-17-C05

RAFL09-17-C05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09662)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-C05 - full reading 
GCAGACGCAG CCATGGGTAT CGATCTTATC GCAGGAGGTA AGAGTAAGAA 
GACCAAAAGG ACTGCTCCTA AGTCCGATGA TGTCTACCTA AAGCTTCTCG 
TCAAGCTTTA CCGGTTTTTG GTGAGGAGAT CTAACAGCAA CTTCAATGCT 
GTGATTCTGA AAAGGCTTTT CATGAGCAAA GTCAACAAAG CTCCTCTTTC 
ACTCTCTAGG CTTGTAGAGT TCATGACTGG CAAGGATGAC AAGATTGCTG 
TGTTGGTTGG AACTATCACT GATGATTTGA GAGTTCATGA GATTCCTGCC 
ATGAAGGTTA CTGCCTTGAG GTTTACTGAG AGGGCTAGGG CTAGAATTGA 
GAAAGCTGGT GGAGAGTGCT TAACCTTTGA CCAGCTTGCT CTCAGAGCTC 
CATTGGGACA GAACACAGTT CTTCTTAGAG GACCAAAGAA CTCGCGTGAA 
GCAGTGAAGC ATTTCGGACC TGCTCCTGGT GTGCCACACA GTAACACTAA 
GCCATATGTT AGGCATAAGG GAAGGAAGTT TGAGAAAGCT AGAGGAAAGC 
GAAAGAGTCG TGGATTCAAG GTCTAAGAAG ATGTTTTCTG GTTTCGTTTT 
GCTTGGTTTA AGTATCGAAG TTTTGGTAGG GAACGCTGGT TCCTCTTTAC 
CCTGTTCCAG ACTTTGTTTT AAGTTCTGTT TTTCTATTCT CAAGACAATT 
GGATATTTTG CTTTGTCTTT TAATCTTACT ACTATTAGCT GCAATGAGAT 
TTTATCTAGA AAAAAAAAAA AAAAA

Gene models with high sequence identity

  1. AT5G27850.1 [+] show detail - Ribosomal protein L18e/L15 superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 1.6e-25
superfamily Ribosomal protein L18e/L15 1.9e-29
HMMPanther Ribosomal protein L18e 4.8e-124
HMMPfam Ribosomal protein L18e/L15 5.1e-24

See the detailed result >

AT5G27850.1

Model type
Protein coding
Short Description
Ribosomal protein L18e/L15 superfamily protein
Computational Description
Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, cytosolic large ribosomal subunit, vacuole, large ribosomal subunit, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e (InterPro:IPR000039), Ribosomal protein L18e/L15 (InterPro:IPR021131); BEST Arabidopsis thaliana protein match is: ribosomal protein L18 (TAIR:AT3G05590.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-C05 introduced

  • F22544 - Specific phenotypes were NOT observed.
  • F29950 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found