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  3. RAFL09-17-E08

RAFL09-17-E08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02023)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-E08 - full reading 
GTCGTCACTT AACCGAGAAA GCAAAAGAGA AGAAGAAGAA GGAATCGAAA 
AATGAGGACT CCGATCCACG CGGTTTCGAC ATGGGTGAGG AGGCAGCCTC 
CAAAGGTGAA AGCTTTCCTT GCCGTCGTAT CTGGCATGGC GGCTCTTGTT 
CTCCTCAAAC TCATCGTTCA CGATCACGAC AATCTCTTCG TTGCCGCCGA 
AGCTGTTCAT TCTATTGGAA TCTCTGTTCT TATCTATAAA CTCATGAAGG 
AGAAGACTTG TGCTGGATTG TCATTGAAAT CTCAGGAGCT TACGGCGATA 
TTTCTAGCTG TGAGGCTTTA TTGCAGTTTT GTAATGGAAT ATGATATACA 
TACCATTCTG GACTTGGCTA CTTTGGGAAC AACTCTCTGG GTTATATATA 
TGATCCGTTT TAACCTCAAA ACTACTTACA TGGAGGAAAA AGACAACTTC 
GCTCTCTATT ATGTGCTGGC GCCCTGTGTT GTGCTAGCTG TATGGATTCA 
TCCATCAACG TCACACAATA TATTGAATAG AATATCCTGG GGATTCTGTG 
TTTACCTCGA AGCTGTTTCA GTACTGCCAC AGTTGAGAGT GATGCAGAAC 
ACAAAGATTG TCGAACCCTT CACGGCTCAT TATGTTTTTG CACTTGGAGT 
AGCAAGATTT TTTAGCTGTG CACACTGGGT TTTACAGATG ATGGACACGC 
ACGGACGACT GCTTGTAGTG CTGGGTTATG GACTATGGCC ATCGATGGTT 
ATAATCTCAG AAATAGTCCA AACATTCATA TTGGCAGATT TCTGTTACTA 
CTACGTTAAA AGTGTTTTCG GTGGCCAGCT TGTTCTAAGG CTTCCATCTG 
GGGTTGTGTA AGTTATAAAG GAAAAAAGAT AAGACACATT ATGACGAAAT 
TTGTTACACG AAGATAGATC TCAGCTTGGT GTAATCTGAG TAGCCTCTGG 
TTACTCTCAA GTTACTCCCT CAGGCCAAGT CCTAATTCTA TTAACTGTGT 
TGTATATTTT TGTGTGGGTC ATCATCATAG ACAGTCCCTT GGATATTATT 
GACATGATTT TTTCCACTGC ATTTGTGCTA AATTATCCTT GGTTCCCACG 
GCAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT2G21190.1 [+] show detail - ER lumen protein retaining receptor family protein
    E-value: 0; Score: 99.91

 

InterPro Scan Digest

Program Description E-value
HMMPanther ER LUMEN PROTEIN RETAINING RECEPTOR 7.2e-199
HMMPanther ER lumen protein retaining receptor 7.2e-199
FPrintScan ER lumen protein retaining receptor 7.6e-14
FPrintScan ER lumen protein retaining receptor 7.6e-14
FPrintScan ER lumen protein retaining receptor 7.6e-14
FPrintScan ER lumen protein retaining receptor 7.6e-14
HMMPfam ER lumen protein retaining receptor 9.2e-41

See the detailed result >

AT2G21190.1

Model type
Protein coding
Short Description
ER lumen protein retaining receptor family protein
Computational Description
ER lumen protein retaining receptor family protein; FUNCTIONS IN: ER retention sequence binding, receptor activity; INVOLVED IN: protein retention in ER lumen, protein transport; LOCATED IN: integral to membrane; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ER lumen protein retaining receptor (InterPro:IPR000133); BEST Arabidopsis thaliana protein match is: ER lumen protein retaining receptor family protein (TAIR:AT4G38790.1); Has 889 Blast hits to 889 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 314; Fungi - 178; Plants - 231; Viruses - 0; Other Eukaryotes - 166 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-E08 introduced

  • F07537 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found