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RAFL09-17-G19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17654)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-G19 - full reading 
CCCGACCTCT TATTTTCATC TGCTTTTGAA TTTCAAACCT TCACATAAAA 
AAAATACTTT TGAATCCGTG TTTCATTCAT CGAATCTTTT TCCGATAACT 
ATGGCTGAGG AAATCAAGAA TGTTCCTGAA CAGGAGGTGC CAAAGGTAGC 
AACAGAGGAA TCATCGGCAG AGGTTACAGA TCGTGGATTG TTCGATTTCT 
TGGGAAAGAA GAAAGACGAA ACAAAACCAG AGGAGACTCC GATCGCTTCA 
GAGTTTGAGC AGAAGGTTCA TATTTCAGAG CCGGAGCCAG AGGTTAAACA 
CGAAAGTCTT CTTGAAAAGC TTCACCGAAG CGACAGTTCT TCTAGCTCCT 
CAAGTGAGGA AGAAGGTTCA GATGGTGAGA AGAGGAAGAA GAAGAAGGAG 
AAGAAGAAGC CAACTACTGA AGTTGAGGTA AAGGAGGAAG AGAAGAAAGG 
GTTTATGGAG AAGTTGAAAG AGAAGCTTCC TGGACACAAG AAACCTGAAG 
ACGGTTCAGC CGTCGCTGCG GCACCGGTGG TTGTTCCTCC TCCTGTGGAA 
GAAGCGCATC CAGTGGAGAA GAAAGGGATT CTTGAGAAGA TTAAGGAGAA 
GCTTCCAGGA TACCACCCTA AGACCACCGT AGAGGAGGAG AAGAAAGATA 
AAGAATAAGA AGATTATCAT TAAAGATATT AAGAATAATG ATGGTTGATT 
TGCTTTGTTT TTTTTTTTTT TTATTGTGAT GATTGATCAT CTTTTGCTTT 
TGTGATGTGT AAGTTTGTTG GCTTTTTTGT TGATTACAAT TTCTTATTTT 
CTCTTGTATA TGGTTTTTAA AAACAAAAGA TCTCAAGGTA TTTTAATGGT 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT1G76180.1 [+] show detail - Dehydrin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Dehydrin 4e-23
PatternScan Dehydrin 0
PatternScan Dehydrin 0
PatternScan Dehydrin 0

See the detailed result >

AT1G76180.1

Model type
Protein coding
Short Description
Dehydrin family protein
Curator Summary
Encodes a dehydrin protein whose expression is induced early on in response to dehydration stress. This gene's expression to cold occurs in two waves, with early induction occurring within 1 h and secondary induction occurring 5 h after the beginning of cold stress. Expression is also induced in response to ABA but not in response to 2,4-D, BA, and GA3. ERD14 protein is capable of binding Ca2+, especially when the protein is phosphorylated.
Computational Description
EARLY RESPONSE TO DEHYDRATION 14 (ERD14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: in 6 processes; LOCATED IN: plasma membrane, chloroplast; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Dehydrin (InterPro:IPR000167); BEST Arabidopsis thaliana protein match is: Dehydrin family protein (TAIR:AT1G20450.2); Has 4819 Blast hits to 3364 proteins in 392 species: Archae - 4; Bacteria - 256; Metazoa - 1221; Fungi - 272; Plants - 1466; Viruses - 16; Other Eukaryotes - 1584 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-G19 introduced

  • F02825 - Specific phenotypes were NOT observed.
  • F03134 - Specific phenotypes were NOT observed.
  • F03430 - rosette leaf::desaturated green
  • F04725 - seed::increased size / seed::increased length
  • F04848 - Specific phenotypes were NOT observed.
  • F05711 - seed::increased size
  • F07411 - Specific phenotypes were NOT observed.
  • F07908 - Specific phenotypes were NOT observed.
  • F08810 - Specific phenotypes were NOT observed.
  • F13231 - seed::increased size
  • F13936 - Specific phenotypes were NOT observed.
  • F15617 - Specific phenotypes were NOT observed.
  • F16250 - Specific phenotypes were NOT observed.
  • F16903 - Specific phenotypes were NOT observed.
  • F19006 - seed::increased size
  • F19516 - Specific phenotypes were NOT observed.
  • F20738 - Specific phenotypes were NOT observed.
  • F22227 - Specific phenotypes were NOT observed.
  • F22548 - Specific phenotypes were NOT observed.
  • F24509 - Specific phenotypes were NOT observed.
  • F25825 - Specific phenotypes were NOT observed.
  • F26022 - Specific phenotypes were NOT observed.
  • F29102 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

24 mutant lines found