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  3. RAFL09-17-I01

RAFL09-17-I01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01900)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-I01 - full reading 
ATCAGACAAT CACAAATCTT TCTCTTTCTC TTTCTCTCTC TAACACAATT 
TAGAACAAAA GTTTCTTCTT TCTTCTCTCC CGAGAGGCCT CTCGCTGTTC 
ATTGAAGTTC TCTTAGAATT TTCTATCACC TTGGTTGTGT AATTTGCAAA 
ACAGACAACA ATGGTTGAGC GTGGGAAGAG GACTCACAAT CGTTTCAGAG 
ACAACAACAA TGACAACAAC CGGAATCAAA GGAGAAGACT TTCTTACGAA 
TCCGAAGAAA AAAAGATCGA TAACAAAGAC GATCTCGTTG TTGTTTACAG 
AATCTTATGC CCAAGTGGTG TCATGGGAAG TGTTATAGGC AAAAGTGGCA 
AAGTTATTAA CTTGATTAGG CAAGAAACTA GAGCTAGGAT CAAAGTTGTT 
GATCCTTTTC CAGGTTGTAG CGAAAGAGTC ATAACGATCT TTTGCTCGGT 
TTCGGAGAAG AAAGACATTG TTGACATTGA GTATAGTGAA TTGGATTACT 
CTGTTCCTTT GTGTTCTGCT CAAGCTGCTC TTCTTAAAGT CCATGATGCT 
ATTGTGGCTT CTTTAGCTAC TGCTGCTGAG AACACTAAGA TTGATAGAGA 
TGACTTTAGA GAATGTCGTC TTTTAGTTCC GTCTAGTCAG TGTTCTATTG 
TCATTGGTAA ATCTGGTTCG ATTATTAAGA ACATTAGAGG TAGAACTAGA 
GCTAACGTTA AGGTTGTCTC TAAAGATGTT TCTGATCCTT CTCACACTTG 
TGCCATGGAT TTTGACAACA TTGTTATGAT ATCTGGTGAG ACTGAATCCG 
TGAAGAAGGC ACTTTTCGCT GTTTCTGCAA TCATGTACAA AGTCAGTCCT 
CGAGAACAGA TTCCTCTGGA TACAACTGTC CAAGAAGTTC CCGCTAGTAT 
TATAATTCCC TCTGATCTGT CTATCTATCC ACAAGCCGGT TTATACCCAA 
GTCAGGATTC TATTTTCCAA CATGGGGCTA ATGTTTCATC GTTTATCGGT 
ACACTACCTC AGGGTTATGG AGAAAATGCT GCAAATCCTG TGCCGGTTTT 
TTCTGCTTCT GCTCTTCCTG TTGTTCATGG TTTTGGTGGG TCTTCCAGAT 
CAGAAAAGTT GGCTATAAAA GTTATTTGCT CTTCTTCCAA AATTGGTCGT 
GTTATCGGGA AAGGAGGATT AACCATTAAG GGAATAAGAC AAGCAAGCGG 
GTCTCATATC GAAGTTAATG ACTCGAGGAC AAATCATGAT GATGACTGTG 
TTATCACTGT CACTGCTACA GAGTCTCCTG ATGATTTGAA GTCTATGGCG 
GTTGAAGCTG TTCTTCTACT TCAAGAGAAA ATTAATGATG AAGACGAGGA 
CAAAGTTAAA ATGCAACTCC TTGTATCTTC TAAGGTAATA GGATGCATTA 
TAGGGAAAAG TGGCTCAATC ATAAGTGAAA TCAGGAAAAG GACAAAGGCC 
GATATTCATA TCTCGAAAGG AAATAATACG CCTAAGTGTG CTGATCCCAA 
TGATGAGCTC GTTGAGATAT CTGGTGAAGT AAGCAATGTG AGAGATGCTC 
TTATTCAGAT AGTTCTGAGG CTTCGAGATG ATGTTTTAAG GGATAGAGAG 
ACTGGTTCCA GGAATCAACC TCCTGCAAGA TCTGAGAATA ACAATTTCTT 
CTCTTCAAGT AGTAGTAATA CTGGTCTTGC ACTTCCTCAA TCTTTCATGT 
CTTCTGTTCC GCAAGTTGCT TCTGTAGATT TCAATAGGAG ACCAGAAACC 
GGGAGCAGCA TGAGCATGCT TCCTTCGAGT GGTGGAATCT ATGGTTATGG 
AAGTTTTCCG GTGGGCAATA CAAGTTATGG ATCCAACTCC TCTTACTCAT 
CCAATCTATA TGGAGGATTG CCTCAGTCTA CTACTATGGA GGTTCGAATC 
CCAGCAAATG CAGTGGGTAA AGTTATGGGC AGAGGAGGAG GCAACTTGGA 
CAACATAAGA AGGATATCAG GAGCCATGAT AGAAATTTCT GATTCCAAAA 
ATTCCCATGG CGGTCGCGTT GCTCTCATTT CCGGGACATC TGAACAGAAG 
CGTACCGCAG AGAACTTGTT CCAAGCTTTT ATCATGTCCA CTTGAATAAT 
TTGCTCTGCC CCTTAATCCT TTTCCATGGA AGTGTGTTCC ATCAATCTAC 
CTCTCAGTGG ATTTCTTTGA TCGGGTTTCT CAGGCTTTCC TCCTTCCATC 
AAGCTCATGT TTAGATATGG TTGCATCTCT CATCAAACAT TTCGGTATCT 
CATCTCGACT CAGTTACTTT TGGTTTCTCG TGCTAGACAT TTTATAGTCT 
TTCAGGACCA TTCTTTTCCC CTTTCCTTGC GAGCTGTTCG TACTATAACT 
ACTTATCTCC GTGCAATAAA ACAAAATCGT TCTTATAGCA AAAAAAAAAA 
AAAA

Gene models with high sequence identity

  1. AT5G46190.1 [+] show detail - RNA-binding KH domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3.6e-09
Gene3D no description 2e-08
Gene3D no description 2.9e-06
Gene3D no description 1.1e-12
Gene3D no description 5.8e-12
ProfileScan K Homology, type 1 12.014
ProfileScan K Homology, type 1 13.376
ProfileScan K Homology, type 1 12.789
ProfileScan K Homology, type 1 15.472
ProfileScan K Homology, type 1 15.158
HMMSmart K Homology 2.3e-08
HMMSmart K Homology 2.9e-11
HMMSmart K Homology 3.4e-08
HMMSmart K Homology 1.6e-12
HMMSmart K Homology 2.2e-09
HMMPanther RNA-BINDING PROTEIN RELATED 2.8e-229
HMMPanther RNA-BINDING PROTEIN RELATED 2.8e-229
HMMPfam K Homology, type 1, subgroup 6.1e-11
HMMPfam K Homology, type 1, subgroup 1e-14
HMMPfam K Homology, type 1, subgroup 2e-10
HMMPfam K Homology, type 1, subgroup 7.5e-13
HMMPfam K Homology, type 1, subgroup 1.8e-12
superfamily Eukaryotic type KH-domain (KH-domain type I) 1.5e-15
superfamily Eukaryotic type KH-domain (KH-domain type I) 5.8e-15
superfamily Eukaryotic type KH-domain (KH-domain type I) 4.8e-13
superfamily Eukaryotic type KH-domain (KH-domain type I) 6.7e-13
superfamily Eukaryotic type KH-domain (KH-domain type I) 2.9e-10

See the detailed result >

AT5G46190.1

Model type
Protein coding
Short Description
RNA-binding KH domain-containing protein
Computational Description
RNA-binding KH domain-containing protein; FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G18375.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-I01 introduced

  • F16519 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds