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  3. RAFL09-17-I08

RAFL09-17-I08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02025)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-I08 - full reading 
AAAAAAAAGA AAGAAATCCA GATCTACTAA AATCCCCAAA TTCAATTTTC 
AAAATTTGAA CTCCTAGAAA ACCCTAGCCT TTGCAATTGG GTGCTACATC 
TTCCAAATCG TTCCGGGATC GAAATCTCTC GAATTGGGGA CGTTGTACAT 
TGCACACGAT GGGCGATTTC AACCTCGCTC TCGTGATTGT CGCGATCGTT 
GTTTGCGTCA TCGTATTCAT CTCTAGCATC TATCTTCTCG TCAACTATCA 
GCATCCAGAT GATGCAAACC AGGCTTATTT CCCCAAATTC GTCGTTGTTT 
TTGGCCTTTC TATTGCTATG ATCTCGATTC TCATGTTACC GGCTGATGTG 
GCCAATCGGC ATGCTTGTCG ACATGCTATA TACAATGGAG CTTGCAATCT 
CACCTTGCCC ATGAAGGATC TTTGGCTTGC TATTTATATC GTGGACGCTA 
TTCTCGTGTT CTTTGTCATC CCCTTCGCAA TGTTTTTCTA TGAAGGCGAC 
CAGGACAAGA CTCTTGGAAA GAGGATAAAA AGTGCCTTAA TTTGGGTAGT 
TACCACGGCT GTTGTTTGTG CTCTGGTGCT TGGAATTTTA TATGGTGTCA 
TTGGAAAGGT GGACTTCTCG GTCAGGCATT TGGCTTCTGC CACATCCACT 
TTCCCTACTT CCTGGCAGTT TTCAAATACT CAACCATGCA TAGGTAACAC 
TGCTCGCCAG TGCTCAGCAT TTACAGCTAA TCCCACATCT GAGAAAACAT 
GGACTATGCG TACTACTTTT CCAGAATATG TTGTTGCTCT TGCGACAATT 
GTTGGGTCAG TTCTTTTCAC GATATTTGGT GGTGTTGGTA TTGCATGTCT 
ACCATTAGGA CTTATCACTG CATTCATCAG GCGACCAAAG GCTGTTATCA 
CTCGATCACA ATATATAAAG GAGGCAACCG AACTAGGTAA AAAGGCAAGA 
GAACTAAAGA AAGCAGCTGA TGGACTTCAT CAGGAAGAAA GAAGTGGTGC 
TAAGGGCAGG AAATGGCGGA AAAATGTGAA AGCAGTTGAA AAGGAGTTGC 
TCCAATTAGA GGAAGATGTG AACCTCTTAG AAGAGATGTA TCCTCAAGGA 
GAGCAGGCAG AAACTGCATG GGCTTTCACT GTGCTCGGAT ACTTGGCCAA 
GTTTATTCTT GGAATCGTAG GATTGATCGT TTCCATTGCT TGGGTTGCAC 
ACATCATCAT ATATCTACTC GTCGACCCTC CTCTCTCCCC TTTTCTTAAC 
GAGGTTTTCA TTAAGCTTGA TGATGTTTGG GGTCTTTTAG GCACTGCTGC 
CTTTGCTTTC TTCTGTTTCT ACCTTCTACT TGCTGTTATC GCTGGGGCAA 
TGATGCTGGG TTTGAAGCTG GTCTTCATTA CCATTCATCC AATGAAATGG 
GGAGCTACTC TAATGAACTC TTTCCTCTTC AATGTCGGCC TCATTCTTCT 
TTGTTCAATC AGCGTGATTC AATTTTGTGC CACTGCATTT GGATATTACG 
CTCAAGCCAC TGCTGCCCAG GAGATATTTG GCCACACATT GCAGTCCCTT 
AGAGGAATTA AGTACCTTTA CAAGTACAAT GTGTTCCAAA TCGGGTTTGT 
TATCCTGGCT GGACTGACTT TCCTATATTA CATTGCCTTT GGATGGAGAA 
GAAAAAAAAC TAGTGGCCGT TTCCAGCTCT CTTCTTAATG TAAAACGTTT 
TCACGGGGAT CTGATTGAGT GCTGTCGACA AAGTTTCTAC TTGTTTCTGG 
ATCATCATCG ATTCCAGAAG TATCTAGAGA CTCTGCTTCT GAGGTTTATT 
TTCCTGAATG TATTATTAAA TTTCTTGTGA GTGTGCTGTT TGGTTGCGCA 
ACAGTTAGCT GTCCTGTCTT GGTCTATTGT ACTGTCTCGG ATGCGATCAT 
GTAATCATAT TTTCTTAATG AGAAGCCTTC TTCGAATTTT TATAAAAAAA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT3G08930.1 [+] show detail - LMBR1-like membrane protein
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMPfam LMBR1-like membrane protein, conserved region 1.3e-134
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT3G08930.1

Model type
Protein coding
Short Description
LMBR1-like membrane protein
Computational Description
LMBR1-like membrane protein; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: LMBR1-like membrane protein, conserved region (InterPro:IPR006876); BEST Arabidopsis thaliana protein match is: LMBR1-like membrane protein (TAIR:AT5G01460.1); Has 384 Blast hits to 384 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 85; Plants - 80; Viruses - 0; Other Eukaryotes - 94 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-I08 introduced

  • F19235 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found