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  3. RAFL09-17-J24

RAFL09-17-J24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01946)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-J24 - full reading 
ACTCCATTCC ACTCTCGTCC CGCTTCGCCT CTTTTAGGGC GCAACCAAGA 
GACAGAGAAG AAGAGAGAGA CTCGTAAGCA ACAATAACCA ATAGCTCTCT 
CTCTCTCTCT CTCTCTCTCC TCTGCTGATT CTTCGCTGAC TCTTGCCTCC 
TCGACGTCGT CTTCGGCTTT GTAGCATCTC GCCGAAGCGT CGTTGATTTG 
AGAGAGACCC AATTTGGATT GTTAGAAAAT GGGTTACATA GGAGCTCATG 
GTGTAGCTGC TCTTAAGAAA CACAAATACA GTGGTGTTGA TCACTCTTAT 
CTTGCCAAAT ATGTTCTCCA ACCTTTTTGG AACCGTTTTG TCAAAATCTT 
CCCTCTATGG ATGCCCCCCA ACATGATAAC ACTTATGGGG TTCATGTTTC 
TTCTCACATC TGCTCTCTTA GGCTATATAT ACTCACCTAA GTTGGATTCT 
CCACCTCCTC GATGGGTCCA CTTTGCACAC GGCTTACTTC TGTTTTTATA 
TCAGACATTT GATGCGGTTG ATGGGAAGCA AGCACGAAGA ACAAATTCAT 
CTAGCCCACT AGGAGAGCTT TTTGACCATG GTTGCGATGC ACTTGGCTGT 
GCGTTAGAAA CAATGGCATA TGGGAGTACT GCTATGTGTG GAAGAGATAC 
TTTCTGGTTT TGGGTTATTT CTGCTGTTCC ATTTTTTGGA GCAACATGGG 
AACACTATTT TACCAATACG CTTACTCTTC CGGTAGTCAA TGGTCCTACA 
GAAGGTCTTG CACTTATATA CTGTGGCCAT TTCTTCACAG CCATTGTTGG 
TGCGGAGTGG TGGGCTCAGC CGTTTGGGAA GTCGATTCCT TTGTTTAGTT 
GGGTTCCGTT TTTGAACGAG ATGCAAATGT CCAGAATAAT ACTATTCTCC 
ATGATTTTCT TTGCTGTTAT ACCAACCCTT GCAATCAACA CGTCTAATGT 
TTACAAAGTT GTACATTCAA GAAATGGAAG CATGCTTCTA GCATTAGCTA 
TGCTATATCC CTTAGTCACG TTAATTGCAG GAGTTCTGAT TTGGGATTAC 
TTGTCTCCAA TTGATCTCAT AAGAAACTAC CCTCACTTAG TTGTGTTGGG 
AACTGGTCTT GCATTTGGAT TCCTTGTGGG AAGAATGATT CTAGCTCACT 
TATGTGACGA ACCAAAAGGA TTGAAAACAA ACATGTGTAT GTCACTGCTT 
TACCTTCCAT TTGCACTAGC AAATGCTCTA ACCGCTAGAC TCAACGACGG 
GGTTCCTCTT GTGGATGAGT TTTGGGTTCT TCTTGGATAT TGTATATTCA 
CATTGTCACT ATATGCGCAT TTTGCAACTT CAGTCATTCA TGAGATCACA 
ACTGCACTTG GAATCTACTG CTTCAGGATT ACTCGGAAAG AAGCTTGAAG 
AAACAAAATG TGATTGAAAT TTTTATTTAT AAGAAAAAGC AAATCTTAAG 
GGAGAAAAAA AATGCAAATC CCAACACGAA TCTGAATATT TTGTTACTTG 
GAATTAAAAA TGATTGACTG ATATGCTTTT GGATGTATAC TCATTAATGT 
TTTTGTTTTA GTGTTTTTTT TCTTGTTCGG TTGAAATAGG GTAATTCATG 
TAGAACCTTT TTGTGTAACG TTTCTAAGAA AAAAAAATAT GGGATTGTTC 
CAAAAAAAAA AAAAAAA

Gene models with high sequence identity

  1. AT3G25585.1 [+] show detail - aminoalcoholphosphotransferase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPIR Choline/ethanolaminephosphotransferase 7.1e-204
PatternScan CDP-alcohol phosphatidyltransferase 0
HMMPfam CDP-alcohol phosphatidyltransferase 2.4e-18
HMMPanther ETHANOLAMINEPHOSPHOTRANSFERASE 5.8e-204
HMMPanther ETHANOLAMINEPHOSPHOTRANSFERASE 5.8e-204

See the detailed result >

AT3G25585.1

Model type
Protein coding
Short Description
aminoalcoholphosphotransferase
Curator Summary
aminoalcoholphosphotransferase (AAPT2) mRNA, complete cds
Computational Description
aminoalcoholphosphotransferase (AAPT2); FUNCTIONS IN: phosphatidyltransferase activity, phosphotransferase activity, for other substituted phosphate groups; INVOLVED IN: phospholipid biosynthetic process; LOCATED IN: membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Choline/ethanolaminephosphotransferase (InterPro:IPR014472), CDP-alcohol phosphatidyltransferase (InterPro:IPR000462); BEST Arabidopsis thaliana protein match is: aminoalcoholphosphotransferase 1 (TAIR:AT1G13560.1); Has 933 Blast hits to 927 proteins in 242 species: Archae - 10; Bacteria - 37; Metazoa - 367; Fungi - 227; Plants - 82; Viruses - 0; Other Eukaryotes - 210 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-J24 introduced

  • F11027 - seed::increased size / seed::increased length
  • F13844 - Specific phenotypes were NOT observed.
  • F27339 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found