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  3. RAFL09-17-N23

RAFL09-17-N23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01941)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-N23 - full reading
GTTTATCGTA GTGCGTTACA AGCGTTTTAA GCTCTCACTA GCAAGCAAGT 
ACTAGCAACA ATGGCGTCAA GCACTGCGAC TATGCTCAAA GCCTCACCGG
TGAAATCTGA TTGGGTTAAG GGACAGAGTC TTCTCCTCCG TCAACCTTCC
TCTGTCTCAG CTATTCGCAG CCACGTGGCA CCTTCCGCTC TCACCGTCCG
AGCCGCTTCT GCTTACGCCG ATGAGCTCGT CAAAACCGCT AAAACAATCG
CGTCTCCGGG ACACGGAATT ATGGCGATGG ATGAGTCCAA CGCGACTTGT
GGAAAGCGTT TGGCGTCAAT TGGGCTAGAG AACACGGAGG CTAACCGTCA
AGCTTACAGG ACGTTGCTTG TGTCGGCTCC AGGACTTGGA CAGTACATCT
CCGGAGCTAT CCTGTTCGAG GAGACTCTGT ACCAATCCAC CACTGATGGC
AAGAAAATGG TTGATGTTCT CGTCGAGCAG AACATCGTCC CTGGCATCAA
AGTCGACAAG GGTTTGGTGC CACTTGTTGG GTCTTACGAC GAGTCATGGT
GCCAAGGACT TGACGGTTTA GCCTCTCGCA CCGCTGCTTA CTACCAACAA
GGTGCTCGTT TCGCCAAATG GCGTACTGTT GTGAGCATTC CAAATGGACC
CTCTGCTTTG GCTGTTAAAG AAGCAGCTTG GGGACTTGCT CGCTACGCAG
CTATTTCTCA AGACAGCGGT CTGGTGCCGA TTGTGGAGCC AGAGATTATG
TTGGACGGAG AACACAGCAT TGACAGGACA TACGACGTTG CAGAGAAGGT
TTGGGCTGAG GTCTTCTTCT ACCTCGCTCA GAACAACGTC ATGTTCGAAG
GTATTCTCCT GAAGCCAAGC ATGGTTACTC CAGGAGCTGA GGCCACAGAC
AGAGCTACTC CTGAGCAGGT TGCTTCCTAC ACTCTCAAGC TCCTTCGCAA
CAGAATCCCT CCTGCTGTCC CCGGAATCAT GTTCTTGTCT GGTGGACAGT
CCGGGTTGGA GGCGACCTTG AACTTGAACG CAATGAACCA GGCACCGAAC
CCATGGCACG TGTCCTTCTC CTACGCACGT GCCTTGCAGA ACACTTGCTT
GAAGACATGG GGAGGCAAGG AAGAGAACGT GAAGGCGGCT CAGGACATTC
TCTTGGCCAG AGCCAAAGCC AATTCGCTGG CTCAGCTCGG GAAATACACT
GGAGAAGGCG AGTCTGAGGA AGCCAAGGAG GGTATGTTTG TAAAAGGCTA
CACCTACTAA GCTATTTGTA ATAATGGTTC CATAGATCAA AACTCAAAAA
CTTGAGCTTG ATTCTGGTCA TTTGAGTTAT TATACTCTTC TTCAGGTATG
AAAAAAAAAA AAAAAA

Gene models with high sequence identity

  1. AT2G21330.1 [+] show detail - fructose-bisphosphate aldolase 1
    E-value: 0; Score: 99.85

 

InterPro Scan Digest

Program Description E-value
superfamily Aldolase 1e-155
HMMPfam Fructose-bisphosphate aldolase, class-I 2.1e-165
Gene3D Aldolase-type TIM barrel 2.2e-141
HMMPanther Fructose-bisphosphate aldolase, class-I 6e-263
PatternScan Fructose-bisphosphate aldolase, class-I 0

See the detailed result >

AT2G21330.1

Model type
Protein coding
Short Description
fructose-bisphosphate aldolase 1
Computational Description
fructose-bisphosphate aldolase 1 (FBA1); FUNCTIONS IN: fructose-bisphosphate aldolase activity, catalytic activity; INVOLVED IN: response to cadmium ion, pentose-phosphate shunt; LOCATED IN: in 8 components; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), Fructose-bisphosphate aldolase, class-I (InterPro:IPR000741); BEST Arabidopsis thaliana protein match is: fructose-bisphosphate aldolase 2 (TAIR:AT4G38970.1); Has 4798 Blast hits to 4794 proteins in 909 species: Archae - 0; Bacteria - 735; Metazoa - 1150; Fungi - 8; Plants - 476; Viruses - 0; Other Eukaryotes - 2429 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-N23 introduced

  • F08549 - Specific phenotypes were NOT observed.
  • F12232 - Specific phenotypes were NOT observed.
  • F15436 - Specific phenotypes were NOT observed.
  • F24647 - Specific phenotypes were NOT observed.
  • F25907 - rosette leaf::decreased size / rosette leaf::increased width / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism
  • F26403 - Specific phenotypes were NOT observed.
  • F28037 - Specific phenotypes were NOT observed.
  • F28409 - rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size / stem::present in fewer numbers in organism / rosette leaf::desaturated green / rosette leaf::dark green / rosette leaf::decreased size / rosette leaf::increased width / cauline leaf::decreased size
  • F28750 - Specific phenotypes were NOT observed.
  • F29447 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

11 mutant lines found