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  3. RAFL09-17-O18

RAFL09-17-O18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda01862)

full reading [+] show sequence

Nucleotide sequence: RAFL09-17-O18 - full reading 
GAAAAAGCTG TTGTCAAGAG AAGAAGGAAG AGAGGAGATA AAAAGCCAAA 
CAAATGGCGT TCAATATCAT AACACCTGGT CGTGTTTATT CAGCCACGTC 
TCTCACTTTC GTTTCCACCA TTAAAGCTGC TTTCGTTAAA CCTCCTTTGG 
CCTCTCCGTC TCGTCGTAAC CTCCTTCGTT TCTCATCATC TCCTTTGTCA 
TTTCCGTCGC TCCGTCGAGG TTTCCACGGT GGTCGTATTG TGGCAATGGG 
TTCTTCTGCT CCTGAATCGG TCAATAAGCC GGAAGAAGAG TGGCGTGCGA 
TTCTTTCTCC TGAACAATTT AGGATTCTCA GACAGAAAGG CACTGAATAT 
CCAGGAACTG GAGAATACAA CAAAGTATTC GACGATGGCA TCTATTGTTG 
TGCAGGATGT GGAACTCCTC TCTACAAATC CACCACCAAA TTCGACTCTG 
GTTGTGGCTG GCCAGCTTTC TTTGATGGAC TCCCCGGAGC TATAACCCGA 
ACCCCTGATC CAGATGGGAG ACGAATCGAG ATCACATGTG CTGCTTGTGG 
AGGACATCTT GGTCACGTTT TTAAAGGAGA AGGTTTCCCT ACTCCTACCG 
ATGAGCGACA CTGTGTAAAC AGTATCTCTC TCAAGTTCAC ACCAGAGAAT 
CCGACCCTGT AATAATATGA TCACAGAAAA AAAGACGTGA TAATATAGGT 
GTGTTGTGTG ATGCTTCTGT CTCTCTCTCG TACTGTGTTT TTGTCTTTTT 
TCTGTGAGAC TAATGTTTAC TTTTGATGGT TAATAATAAG GTCGTTGAAA 
AAAAAAAAAA AAA

Gene models with high sequence identity

  1. AT4G21860.3 [+] show detail - methionine sulfoxide reductase B 2
    E-value: 0; Score: 99.75

 

InterPro Scan Digest

Program Description E-value
superfamily Mss4-like 1e-49
HMMPfam Methionine sulphoxide reductase B 1.5e-53
HMMPanther METHIONINE SULFOXIDE REDUCTASE 4.4e-60
HMMTigr Methionine sulphoxide reductase B 1.4e-46

See the detailed result >

AT4G21860.3

Model type
Protein coding
Short Description
methionine sulfoxide reductase B 2
Computational Description
methionine sulfoxide reductase B 2 (MSRB2); FUNCTIONS IN: peptide-methionine-(S)-S-oxide reductase activity; INVOLVED IN: oxidation reduction; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Methionine sulphoxide reductase B (InterPro:IPR002579), Mss4-like (InterPro:IPR011057); BEST Arabidopsis thaliana protein match is: methionine sulfoxide reductase B3 (TAIR:AT4G04800.1).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-17-O18 introduced

  • F00331 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found