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  3. RAFL09-18-B09

RAFL09-18-B09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02024)

full reading [+] show sequence

Nucleotide sequence: RAFL09-18-B09 - full reading 
GTCCTTGAAG CAGTCAAATT CTTCTCTGAA CTCCAAACAT CGCCATGTCC 
GAGATTCTCT CTTCGTTGAG GTCACTAATG GCCTCTCACT CTCCTCCTCT 
TGATGCTTTG GTTGTTCCTT CCGAAGACTA TCACCAGAGC GAGTATGTTT 
CTGCACGAGA CAAACGCCGT GAGTTCGTGT CTGGATTCAG TGGAAGTGCA 
GGTTTGGCAC TTATCACGAA GAAGGAAGCA AGACTTTGGA CAGATGGTCG 
ATACTTCTTG CAAGCATTGC AACAGCTTAG CGATGAGTGG ACACTAATGC 
GGATGGGAGA AGATCCTCTT GTTGAAGTTT GGATGTCTGA TAATCTACCT 
GAAGAGGCAA ATATAGGTGT TGATTCATGG TGTGTCTCGG TAGACACTGC 
GAATAGATGG GGGAAATCGT TTGCCAAGAA GAATCAGAAA CTAATCACCA 
CAACTACTGA TCTTGTGGAT GAAGTTTGGA AGAGTCGTCC ACCTTCTGAG 
ATGAGTCCGG TTGTTGTTCA TCCTTTGGAG TTTGCTGGCC GTTCTGTTTC 
CCATAAATTC GAAGATTTGA GGGCAAAGCT TAAGCAAGAG GGTGCTCGTG 
GTTTGGTCAT CGCTGCTCTT GATGAGGTTG CTTGGCTATA TAATATCCGT 
GGAACTGATG TTGCTTATTG TCCCGTTGTT CATGCGTTTG CAATCCTTAC 
CACCGACTCT GCGTTTCTCT ATGTTGACAA AAAGAAAGTG TCTGATGAGG 
CAAACTCTTA TTTCAATGGG CTCGGTGTGG AAGTCCGGGA ATACACAGAT 
GTGATCTCAG ATGTGGCCTT GCTTGCTTCG GATCGACTTA TTTCTTCATT 
TGCCTCTAAA ACTGTCCAAC ATGAGGCTGC AAAGGATATG GAGATTGATT 
CTGACCAGCC TGATCGGTTA TGGGTGGATC CTGCTTCGTG CTGCTATGCA 
CTTTACTCCA AATTGGATGC TGAGAAGGTC CTTCTGCAAC CATCCCCTAT 
ATCCCTCTCA AAAGCCTTGA AGAACCCGGT TGAGCTCGAA GGGATCAAGA 
ATGCACATGT TCGTGATGGT GCTGCTGTTG TCCAGTACCT TGTTTGGCTC 
GACAATCAGA TGCAGGAGCT CTATGGAGCA TCTGGATACT TCTTGGAAGC 
AGAGGCAAGC AAAAAGAAAC CATCAGAAAC CTCTAAGCTT ACTGAAGTGA 
CTGTGAGCGA TAAGCTGGAA AGTCGAGCTT CAAAAGAGCA TTTTAGAGGT 
TTAAGCTTTC CTACTATATC ATCGGTTGGT TCAAACGCTG CTGTTATTCA 
TTATTCACCA GAGCCAGAAG CTTGTGCCGA GATGGACCCC GACAAAATTT 
ACTTATGTGA TTCAGGAGCA CAGTATCTCG ATGGAACAAC TGATATAACC 
CGAACGGTTC ACTTTGGAAA ACCTTCAGCT CATGAAAAGG AATGCTATAC 
TGCGGTCTTC AAGGGTCATG TTGCACTAGG AAATGCTCGG TTTCCAAAGG 
GAACAAACGG CTATACACTT GATATTCTTG CTCGAGCTCC TTTGTGGAAG 
TATGGGTTGG ATTATCGACA TGGTACTGGT CATGGAGTTG GTTCTTACCT 
TTGTGTTCAT GAAGGACCTC ACCAAGTTAG TTTCAGACCG AGTGCCAGGA 
ATGTACCTCT TCAAGCTACC ATGACTGTAA CAGATGAACC TGGTTACTAT 
GAAGACGGGA ACTTTGGTAT TAGGTTGGAG AATGTTCTTG TTGTCAATGA 
CGCTGAGACT GAATTCAATT TTGGCGACAA GGGCTACTTG CAATTCGAGC 
ATATCACTTG GGCACCATAT CAAGTGAAAC TTATCGATCT AGACGAGTTG 
ACACGGGAAG AGATTGACTG GTTAAACACA TATCATTCGA AGTGCAAAGA 
CATCTTAGCC CCATTTATGA ACCAGACTGA AATGGAATGG CTCAAGAAAG 
CTACCGAACC TGTAAGTGTA TCCGCTTGAT CCCCTCCCAG ATTTCTCTTA 
AATAGATGTT TATCAATGGC TCCTTCACTT CTCTCACTAG TAAACCAAAA 
ACATTCAAGT CATACACAGA TTATTTTCTT TAGTTTTGCA TTCAAAGTTC 
ATGTTTCTGG ACCACATGTC TTTATTCATA GCAGATTCTC AGTTGTTGAA 
CCAAAAAAAA AAAAAAAA

Gene models with high sequence identity

  1. AT4G36760.1 [+] show detail - aminopeptidase P1
    E-value: 0; Score: 99.86

 

InterPro Scan Digest

Program Description E-value
Gene3D Peptidase M24, structural domain 1.3e-48
PatternScan Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site 0
HMMPfam Peptidase M24, structural domain 2.9e-39
HMMPfam Creatinase 1.4e-16
HMMPanther XAA-PRO AMINOPEPTIDASE 1 2e-203
HMMPanther Peptidase M24, structural domain 2e-203
superfamily Peptidase M24, structural domain 3.1e-51

See the detailed result >

AT4G36760.1

Model type
Protein coding
Short Description
aminopeptidase P1
Curator Summary
Arabidopsis aminopeptidase P1
Computational Description
aminopeptidase P1 (APP1); FUNCTIONS IN: aminopeptidase activity, N-1-naphthylphthalamic acid binding; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site (InterPro:IPR001131), Peptidase M24, structural domain (InterPro:IPR000994), Creatinase (InterPro:IPR000587); BEST Arabidopsis thaliana protein match is: Metallopeptidase M24 family protein (TAIR:AT3G05350.1); Has 10398 Blast hits to 10335 proteins in 2401 species: Archae - 277; Bacteria - 6310; Metazoa - 362; Fungi - 246; Plants - 146; Viruses - 0; Other Eukaryotes - 3057 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-18-B09 introduced

  • F13027 - Specific phenotypes were NOT observed.
  • F25211 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found