1. Home
  2. Full-length cDNAs
  3. RAFL09-18-E14

RAFL09-18-E14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02071)

full reading [+] show sequence

Nucleotide sequence: RAFL09-18-E14 - full reading 
CACATTCACG CACGCGCATC CATCTTCACC GTTTCATACG AAACTCTTTA 
CGAGGAGTCT CTCTTTACTT TTCTCTCTCT CTCAAAGAAA GAAAGAAAAG 
CCTCTTTTAA TTTTCTCCGG CCAGAGTGTG TGGGATGCAC AAGGAAAGAG 
GGAAAATGCC GGTTTCTAGC AACAGAAATA GAGTATCGCC ATACCCGCTT 
CGCTCTTGCA GGAACAAGAA ACAAAAAGAA GTCGAGGCGT CGTCGTCACC 
TGTTGAGTTA GAGAGTGTTA GTGAATGGGA GGATGTGAGG TGTGTGATTT 
GTATGGAGCC TCCTCACAAT GCTGTCCTCT TGCAATGCTC TTCTTTCTCC 
AAAGGATGTC GTGCTTACAT GTGTGATACA AGCGCTCGTC ACTCCAATTG 
TTTCAAGCAG TACCGCAGAA GCAACAGCTC AAGCCGTTGT AGTGGCAAGA 
CTCTACATTG TCCCTACTGC AGAGGAGAGG TTCAGGGGAC TATGAAGTCG 
ACTTGTGCTC GGAGATTCAT GAATGCTAGA CCGAGGTGTT GTACTGTTGA 
CAAGTGCGAT TTCTCAGGGA CCTATGCGCA GCTGAAAAAT CACTTGAAAA 
CTGAGCATCC TGGTTTTACA CCGCCAAAGT TAGACCCTTG GGAGCAACAC 
ATGTGGGAGC AGTTGGAGAG AGAGGCGGAG TACATTGAAA TGCTCAACGC 
TCGTCAGAGA TGGGATGCAG AACAGAGATT GTTGGCGACT TCTCTCCATC 
AGCTTCCATA TCGTCATCCC ATGATTGATC TCAACTTTGA TGCGTTGGTG 
CATAATCTGT TTCTTGGTGC GTCCATGGAG AGCCGTGCAA GCACCGACAA 
TTACCCGGCT CACATACCCC GTCTGGAGTT CCATGCCCCC ATGTATCCCA 
GATGGACGCC ATGAAGATTC TGAGTGCCAG AGTCTATGAG GAATTCTTCC 
AAAAGTTTTG ATGTCTCTTG ATTTTTATCA TAATGTAATG TTCTTGTAGC 
GACATCAGTT CTTGTTCTAG GCATAAATTT AATATTGTTT GTATGTTAGC 
TTCTGTTAGT GAAGTCTTCA TAGCTAGGAT CATCTTTTGC CTATTCAAAA 
ATCTCTGCTT AAATCAAATT ATTCACATTC TTCATAAAAA AAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT1G15430.1 [+] show detail - Protein of unknown function (DUF1644)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF1644 1.4e-24
HMMPfam Protein of unknown function DUF1644 5.4e-30

See the detailed result >

AT1G15430.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1644)
Computational Description
Protein of unknown function (DUF1644); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1644 (InterPro:IPR012866); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1644) (TAIR:AT1G80220.1); Has 273 Blast hits to 249 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 273; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-18-E14 introduced

  • F22046 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found