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  3. RAFL09-18-I07

RAFL09-18-I07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05465)

full reading [+] show sequence

Nucleotide sequence: RAFL09-18-I07 - full reading 
GATTTCTTCT TCTTCTTCAG AATTCAGATC AGATCTCCGG CGATAATCTT 
TGAGATCTGA AATTTCTTAC AATCAGGAGA GAAAGATGTA CGGATTCGAG 
GCGCTTACGT TCAATATCCA TGGGGGATAC TTGGAGGCGA TCGTCAGAGG 
CCACCGTGCT GGGCTTCTCA CCACCGCCGA TTACAACAAT CTATGTCAGT 
GTGAGAACCT AGACGATATC AAGATGCATC TCTCTGCCAC CAAATACGGT 
CCTTACCTCC AAAACGAACC ATCACCTCTG CATACCACTA CAATTGTGGA 
GAAGTGTACG CTCAAGCTTG TTGATGACTA CAAGCATATG CTTTGCCAAG 
CTACTGAGCC AATGTCTACC TTTTTAGAGT ACATCAGATA TGGTCATATG 
ATTGACAATG TCGTGCTCAT TGTTACTGGA ACCCTTCACG AGAGAGATGT 
TCAAGAGTTG ATCGAGAAAT GTCACCCTTT AGGCATGTTT GACAGTATTG 
CTACACTAGC TGTTGCTCAG AACATGCGGG AACTCTATAG GTTGGTGCTT 
GTGGACACTC CTCTGGCTCC ATACTTTTCT GAATGCCTAA CATCAGAGGA 
TCTCGATGAC ATGAACATAG AGATTATGAG GAATACCCTC TACAAAGCAT 
ACCTTGAGGA TTTTTACAAC TTCTGTCAGA AACTTGGTGG CGCAACAGCA 
GAGATTATGT CTGACCTTTT GGCCTTTGAA GCCGACAGGA GAGCAGTGAA 
TATCACTATC AACAGCATTG GCACTGAGCT CACAAGAGAA GACAGGAAGA 
AACTGTACTC CAACTTTGGT CTCCTCTATC CATATGGCCA CGAGGAGCTT 
GCTATCTGTG AAGACATAGA TCAGGTTCGT GGTGTTATGG AAAAATACCC 
TCCGTATCAA GCTATATTCT CCAAGATGTC TTATGGAGAA AGCCAGATGC 
TCGACAAGGC ATTTTATGAA GAAGAAGTCA GAAGGCTTTG CTTAGCCTTT 
GAGCAGCAGT TCCATTACGC GGTATTCTTT GCGTATATGA GGTTGCGGGA 
GCAGGAGATC AGGAACCTGA TGTGGATATC TGAATGTGTT GCACAGAACC 
AGAAGTCCAG GATCCACGAT AGTGTGGTCT ACATGTTCTG AGTCTGGTAA 
GAAGTGTAAT CTGTCTGAAA AAAACGGAGA ATAAGAGGAA CCCATATGGT 
TGTTGTTGGT TTTCTTCATT ACTCCATTTT TATTAGAGAA TCTGCTGTAC 
AATCTTGCGG TCTACATTCA CTGTTTATGT CGCTCTGCGT GTATCAAAAA 
CTGCTCAATA AGAATCTATC CAATTTGTTT GTTTTTTTTC TCCCACATAT 
TCTTGCTTGG TTCCGGTAAA CTCTTTGTAA TGTCGAATAA TTTACGATGT 
ATACGAATTA CTTTTGGCGG CC

Gene models with high sequence identity

  1. AT3G28715.1 [+] show detail - ATPase, V0/A0 complex, subunit C/D
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam ATPase, V0/A0 complex, subunit C/D 4.2e-93
superfamily ATPase, V0/A0 complex, subunit C/D 9.6e-97
HMMPIR ATPase, V0 complex, subunit D 4.1e-232
HMMPanther VACUOLAR ATP SYNTHASE SUBUNIT AC39 1.4e-210

See the detailed result >

AT3G28715.1

Model type
Protein coding
Short Description
ATPase, V0/A0 complex, subunit C/D
Computational Description
ATPase, V0/A0 complex, subunit C/D; FUNCTIONS IN: hydrogen ion transmembrane transporter activity, proton-transporting ATPase activity, rotational mechanism; INVOLVED IN: proton transport, ATP synthesis coupled proton transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: ATPase, V0/A0 complex, subunit C/D (InterPro:IPR002843), ATPase, V0 complex, subunit D (InterPro:IPR016727); BEST Arabidopsis thaliana protein match is: ATPase, V0/A0 complex, subunit C/D (TAIR:AT3G28710.1); Has 636 Blast hits to 635 proteins in 308 species: Archae - 22; Bacteria - 2; Metazoa - 293; Fungi - 152; Plants - 74; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-18-I07 introduced

  • F20434 - seed::increased width
  • F20747 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found