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  3. RAFL09-18-I18

RAFL09-18-I18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda02186)

full reading [+] show sequence

Nucleotide sequence: RAFL09-18-I18 - full reading 
AAAGCGACGC CGTTTTAAAG GAGATGGATA AACAACCGGC GACCAGTTGG 
AGTATCCATA CCCGGCCGGA GATAATCGCC AAGTACGAGA TCTTCGAGCG 
AGTCGGATCC GGAGCTTACG CCGACGTTTA CAGAGCTCGC CGTCTCTCCG 
ACGGTCTAAT CGTCGCGCTC AAGGAGATTT TCGATTACCA ATCTGCGTTC 
CGGGAGATTG ACGCGCTCAC CATCCTCAAT GGATCTCCTA ATGTAGTTGT 
TATGCACGAA TACTTCTGGC GTGAGGAAGA GAACGCTGTG CTTGTGCTTG 
AGTTTCTTAG GTCGGATCTC GCTGCGGTGA TCCGAGATGG TAAGAGGAAG 
AAGAAGGTAG AAGGAGGGGA TGGATTCTCG GTTGGGGAGA TTAAGAGATG 
GATGATTCAG ATTTTAACCG GTGTTGATGC TTGTCATCGG AATTTGATTG 
TACATAGAGA TTTGAAGCCT GGGAATATGT TGATTTCTGA TGATGGAGTT 
CTTAAGCTTG CTGATTTTGG TCAGGCTAGG ATACTCATGG AGCATGATAT 
TGTAGCTTCA GATGAAAACC AACAAGCTTA CAAACTGGAA GACAAAGATG 
GAGAAACCAG CGAACCACCA GAAGTTATTC CTGATTATGA GAACTCACCT 
AGGCAAGGGT CTGATGGTCA GGAACGGGAA GCGATGAGTA AAGACGAGTA 
CTTCCGACAG GTGGAAGAGC TCAAGGCTAA ACAGGTTGTT AGAGATGATA 
CTGATAAGGA CTCGAATGTG CATGATGGAG ACATATCTTG CCTTGCAACG 
TGCACTGTTA GTGAAATGGA TGATGATCTC GGTAGGAACT CGTTTTCTTA 
CGATGCTGAC GAAGCAGTGG ATGATACACA GGGTTTGATG ACATCTTGTG 
TGGGAACCCG ATGGTTTAGG CCACCAGAAC TGCTCTATGG ATCTACGATG 
TATGGGTTAG AGGTCGATCT ATGGTCGCTT GGTTGTGTGT TTGCAGAACT 
CTTGTCTCTT GAGCCTTTGT TCCCAGGAAT TTCAGATATT GATCAGATCA 
GCAGAGTGAC CAATGTGCTG GGAAATTTAA ATGAAGAGGT CTGGCCTGGT 
TGTGTTGATC TTCCAGACTA CAAGTCAATC TCATTTGCTA AAGTAGAATC 
TCCTCTTGGT ATTGAAGGAT GCCTTCCCAA CCATTCAGGG GATGTGATAT 
CGCTGCTCAA GAAGCTTATC TGTTATGATC CAGCTAGTAG AGCTACTACT 
ATGGAGATGC TGAATGACAA ATATTTAAGT GAAGAGCCTC TTCCAGTTCC 
AGTTTCAGAG CTCTATGTGC CTCCGACAAT GAGTGGACCA GATGAGGATT 
CTCCGAGAAA GTGGAATGAT TACAGAGAAA TGGATTCAGA TTCAGATTTT 
GATGGCTTTG GACCCATGAA TGTAAAGCCT ACCAGTAGTG GATTTACAAT 
AGAATTCCCC TGACCTTGGC ATTTAAGAGT CCATGGTTGA GCATCTTGAT 
CATCCCGACT TCCCCTGAAT TCGCCTACTT TGTCAAAAAT GTGTTGTGTG 
TGTGTGTGTG TTGTTCCTCT CTCTCTGCCT CCCTCGTATG AAAATGGTAA 
CATTTACAAT TGGAAAGTCG GTGTTAGCCT TTAGCTATTA GCTGAAGAGC 
TAGTTTTCTT GTTGCCCAGG CCATTCTTTA CCCTATTTTT CATCTGAAGT 
AACAATGAAA CAAAATCTAT ATATACTCGA GTTTTG

Gene models with high sequence identity

  1. AT4G28980.1 [+] show detail - CDK-activating kinase 1AT
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CAK1 2.9e-189
HMMPanther CDC2, MAP KINASE-RELATED 2.9e-189
HMMSmart Serine/threonine-protein kinase domain 3e-68
HMMSmart Tyrosine-protein kinase, catalytic domain 0.00015
HMMPfam Serine/threonine-protein kinase-like domain 1.7e-29
HMMPfam Serine/threonine-protein kinase-like domain 5e-19
Gene3D no description 8.6e-13
Gene3D no description 3e-51
superfamily Protein kinase-like domain 3.9e-74
ProfileScan Protein kinase, catalytic domain 37.418
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0

See the detailed result >

AT4G28980.1

Model type
Protein coding
Short Description
CDK-activating kinase 1AT
Curator Summary
Encodes a CDK-activating kinase that regulates root initial cell differentiation. Phosphorylates CDKD2 and CDKD3, but not CDKD1. Controls CDK activities and basal transcription.
Computational Description
CDK-activating kinase 1AT (CAK1AT); CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cyclin-dependent kinase D1;3 (TAIR:AT1G18040.1); Has 87352 Blast hits to 72841 proteins in 3452 species: Archae - 58; Bacteria - 8929; Metazoa - 34591; Fungi - 11921; Plants - 15740; Viruses - 134; Other Eukaryotes - 15979 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-18-I18 introduced

  • F06718 - whole plant::decreased height / stem::present in greater numbers in organism / stem::abnormal
  • F12048 - Specific phenotypes were NOT observed.
  • F21117 - Specific phenotypes were NOT observed.
  • F23619 - Specific phenotypes were NOT observed.
  • F25230 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found