1. Home
  2. Full-length cDNAs
  3. RAFL09-18-M05

RAFL09-18-M05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05473)

full reading [+] show sequence

Nucleotide sequence: RAFL09-18-M05 - full reading 
CTCTCTCTCC TTTTCATCTT CTTTAACGCT TCTCTTTTCC AGAACTTGCT 
CTCTCTCTCT CTTTCTATCA TCTCCTCACC GCTTCCTAAA TCTCTATAGC 
GGTCTTCCTT CCCTCCTTTG TTTCCGGGCT GTTCCTTAAT CACTATCTCT 
TTCTCTTTCT TCTGCCATCG CCAAACCTTA TCTGGGTTTT GCTTCTTATT 
TGAAGATTTA TATGGGCTGA ACTAGGAATT TCATGGGAGT TGTGGAGGAT 
ACTGAACCTC CTTTGAAACG TGCTAAGAGG CTTGCTGACG AACCGAACGG 
CTTCTCCGCG AACTCGTCTG TTAGAGGTAG TAGTGTGAAC AGCAACTCTT 
TGGGAGACCT GATGGCAAGG CCTCTGCCCT CCCAAGGGGA TGACGAAACT 
ATCGGCTCCA AAGGGGTCAT TAGAAAATCT GAATTCGTTA GGATTATCAC 
TAGGGCTCTT TATTCTCTTG GATATGATAA AACCGGGGCT ATGTTGGAGG 
AAGAATCCGG TATCTCTCTG CACAATTCCA CCATTAAGCT GTTTCTGCAG 
CAGGTTAAGG ACGGCAAATG GGATCAAAGT GTTAAAACAT TGCACAGAAT 
CGGTTTCCCT GATGAGAAGG CTGTCAAGGC TGCGTCTTTC TTGCTCCTAG 
AGCAAAAGTT CTTGGAGTTT CTCAAAGTTG AAAAGATAGC TGATGCGCTA 
CGCACCTTAA GGAATGAGAT GGCGCCTCTT CGTATTAATA CAAAGCGTGT 
TCATGAGCTC GCTTCCTCCC TTATATCACC TTCAAGCTTT ATATCACATA 
CCACTTCGAC TCCAGGTAAA GAAAGTGTGA ATTCAAGGTC TAAGGTTTTG 
GAGGAACTGC AAACCTTGCT TCCTGCTTCT GTTATAATCC CAGAAAAGAG 
GTTGGAGTGT TTAGTTGAGA ATTCACTTCA TATTCAGCGG GATTCTTGTG 
TTTTCCATAA TACTTTGGAT AGTGATTTGT CTTTGTATTC TGATCATCAA 
TGCGGGAAGC ACCAAATTCC TTCTCAGACT GCTCAGATCT TGGAGTCACA 
TACCGATGAA GTTTGGTTCT TGCAATTTTC ACATAATGGC AAATATTTGG 
CTTCATCTTC CAAGGATCAA ACCGCAATTA TATGGGAGAT CAGCGCAGAT 
GGGCACATTT CATTGAAGCA TACACTTGTT GGCCACCACA AACCCGTGAT 
TGCCATCTTA TGGAGTCCTG ATGATCGTCA AGTTCTTACA TGTGGAGCAG 
AAGAGGTTAT CAGACGCTGG GATGTTGATT CAGGAGACTG TGTTCACATG 
TATGAAAAAG GCGGTATCAG TCCCATTTCT TGCGGATGGT ATCCTGATGG 
GCAGGGGATA ATCGCCGGGA TGACAGACCG AAGCATCTGC ATGTGGGATT 
TAGATGGTAG AGAGAAGGAA TGCTGGAAAG GTCAGAGGAC TCAAAAGGTA 
TCAGATATAG CAATGACGGA TGATGGAAAG TGGCTCGTAA GTGTATGCAA 
AGATTCCGTG ATATCACTAT TTGATAGAGA AGCTACAGTT GAGAGATTAA 
TAGAAGAGGA AGACATGATT ACCTCGTTCT CGCTTTCGAA TGACAACAAA 
TATATCCTGG TAAACCTCCT CAACCAGGAA ATCCGTCTCT GGAATATTGA 
AGGTGACCCC AAGATTGTGT CGAGATACAA AGGCCACAAG CGTTCACGAT 
TCATCATCAG ATCATGCTTT GGTGGGTATA AACAAGCTTT CATCGCTAGC 
GGAAGCGAGG ACTCTCAGGT ATATATATGG CACAGATCTA CAGGGAAGTT 
AATAGTTGAG CTACCAGGCC ATGCAGGAGC AGTTAACTGC GTGAGCTGGA 
GCCCGACGAA TCTACACATG TTGGCTTCAG CAAGCGATGA TGGAACAATA 
AGGATATGGG GACTTGACCG GATTAACCAA CAAAACCAGA AGAAGAAGCT 
AGTGCAAGGA AGTAGCAGTA ATGGTGTGAT TCACCGATGC AATGGGAATT 
GATTATGATA AAAAAAAAAG GAATGACCTT CTTAAAACTA TTTAACAGTT 
ATGTTGTTTC TTCTTTCTTC ATCAGCCTCT TTTTGTTTGC TTCCTTTGGT 
ATGGAAAGCA AACGAAAGAA GGTAAAAGCT GTTTTTTTTT TTCAAATTCT 
GAACCCATAA GTGGAAGGAA CAAAAAGGAA AAAGAAAATG CAATTTGCAA 
CATAATTCTT CTATTGATGT TACATTGTAC AT

Gene models with high sequence identity

  1. AT5G08560.1 [+] show detail - transducin family protein / WD-40 repeat family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther WD REPEAT PROTEIN 26-RELATED 7.3e-182
Gene3D WD40/YVTN repeat-like-containing domain 3.9e-63
HMMSmart LisH dimerisation motif 0.0026
HMMSmart CTLH, C-terminal LisH motif 4.1e-10
HMMSmart WD40 repeat 2e-07
HMMSmart WD40 repeat 1.7e-05
HMMSmart WD40 repeat 0.72
HMMSmart WD40 repeat 0.36
HMMSmart WD40 repeat 13
HMMSmart WD40 repeat 0.63
HMMSmart WD40 repeat 2.8e-11
ProfileScan WD40 repeat 2 12.981
ProfileScan WD40 repeat 2 13.082
ProfileScan WD40 repeat 2 14.352
ProfileScan WD40-repeat-containing domain 41.473
ProfileScan LisH dimerisation motif 9.316
ProfileScan CTLH, C-terminal LisH motif 11.991
FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
FPrintScan G-protein beta WD-40 repeat, region 2.1e-05
HMMPfam WD40 repeat, subgroup 1.3e-07
HMMPfam WD40 repeat, subgroup 4.3e-05
HMMPfam WD40 repeat, subgroup 0.19
HMMPfam WD40 repeat, subgroup 0.1
HMMPfam WD40 repeat, subgroup 0.21
HMMPfam WD40 repeat, subgroup 3.2e-12
PatternScan WD40 repeat, conserved site 0
PatternScan WD40 repeat, conserved site 0
superfamily WD40 repeat-like-containing domain 4.4e-65

See the detailed result >

AT5G08560.1

Model type
Protein coding
Short Description
transducin family protein / WD-40 repeat family protein
Computational Description
transducin family protein / WD-40 repeat family protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), CTLH, C-terminal LisH motif (InterPro:IPR006595), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), LisH dimerisation motif (InterPro:IPR006594), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G43920.1); Has 58921 Blast hits to 28907 proteins in 822 species: Archae - 84; Bacteria - 8409; Metazoa - 23216; Fungi - 12597; Plants - 7341; Viruses - 6; Other Eukaryotes - 7268 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-18-M05 introduced

  • F07247 - Specific phenotypes were NOT observed.
  • F07740 - Specific phenotypes were NOT observed.
  • F24747 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

5 mutant lines found