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  3. RAFL09-18-M24

RAFL09-18-M24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05475)

full reading [+] show sequence

Nucleotide sequence: RAFL09-18-M24 - full reading 
AAAAAAGGTT GAGTAGAGAT TAGGCAAAAA CAAAATTCTC GATCCCCAAA 
TTTCGAAAAC TTGTTCTTAG GGCGATTCTT CTCTTTGGTC ATTTGGCGAA 
TTTGATTTAT ATCCATCGGT GATCGGATTT TTTTCAGTCT TCTCCGTCTC 
GTCGTTACCG GCGTTTGATC GGATCATCGT TTTGTTTCAG GCGAAATATG 
GTGGTGATCT CCCTGAAGAT TTTGAATTCA AAATTTCTTC GGTTGCTTCC 
TCTTGACTTT ATCGCGATTT CGATTACGTG TAGACTTTCT TCTTGGCTTT 
GTCTTCGAAT CAATTAGGAT TGTGAATAAT CGTGTCTGTG TATATAAGAC 
TGGTGATTGA TTATTAGGGC ATCGGTTGGC AGGAGAATAG ATTGTTTTTT 
TTTTTTGGTG TGTGTTGGAT CTTTAGATCT TTGACTGAGG AATATGTATA 
TCAAAGAACT GACGGAAACG GATGAGGAGA AGAGGGAGAG ATCGGTTGAG 
GATAACGTTG ATGATGGAGA TAAGGCGGTA TTGGTGAGCA GAGGAAACGT 
GATTGTGTTG ACTACAAAGA GGGCACTCGT TGGTGTTGGT GCTCGTGCTT 
TGTTTTATCC TACTCTGGTT TACAACGTTG TTAGGAATAA GCTCGAATCT 
GAGTTTCGCT GGTGGGATCG CGTGGCTGAG TTTATATTAC TGGGAGCTGT 
TCCATTTCCA TCTGATGTTC CACAGCTGAA AGAGCTCGGT GTTTGTGGAG 
TGATCACTCT GAATGAGCCA TATGAAACTT TGGTTCCATC GTCTCTCTAC 
AAATCTTACT GCATTGACCA CCTGGTGATT GCTACAAGAG ATTATTGTTT 
TGCTCCTTCC ATGGAAGCAA TATGCCAAGC TGTAGAATTT ATCCATAGAA 
ATGCTTCGCT TGGAAAGACG ACTTATGTTC ACTGCAAAGC GGGTCGGGGT 
CGCAGCACAA CTATTGTCAT ATGCTACTTG GTTCAACACA AAAACATGAC 
ACCTGAAGCA GCATATTCCT ACGTGAGATC AATCAGGCCC AGGGTTCTTT 
TAGCAGCAGC CCAATGGAAG GCCGTTGTTG AGTACTACCA TGTCAAGGTG 
CTGAATACTC AGAGTTGCTT AACTGATGCA ACTTCAGCTT TGATCCCGAG 
AAATGTAAGC AGGTTTGTTC TGGGAATGTA GTGGTGTTTG ATGATGGGTC 
AATGGTTGTA GTCACCCACT CGGATCTAGA GGGCTATAAT GATGATGACT 
CACGGTCACG GAGGTCAGTG AAAGTTAATG GGAATGAGCT ATGGGCGGCA 
GCTGCAGATC TGAGCATGGT GTACAGGGTG AAAGTGGTGG GGCAGGCTGC 
GATGGCGAGG ATATCGTGTC TGTGGCTGGG CTTGCGTGAG GACCAAAAGC 
TTTCTGGGAA AAATCTTTCC ATGGGAGGCA TAAGCGTCGA CATTTCTGTC 
TACTGATGAT GATGGCGAAG AATGAATGCA GGTGAGTCTG CTGGCGAGTG 
AGTGAATATA CCTTATTCAC TGTTTCTCCC CCAGTAGAAA AAAAAAGTCT 
CTAAATAAAA AAATGGGTCA AATTAGGTAT AGAAGTAAGC AAGGGTTTGT 
AAATTTGAAA AAAAAAAAAC TTGGTTTTGT CGTCTGGGTA TTGTAATTAA 
ATACTACCTT GTCCCTCATT TGCCTTTGAT GAGGATAAAC ATGAATTAGT 
CTCC

Gene models with high sequence identity

  1. AT2G35680.1 [+] show detail - Phosphotyrosine protein phosphatases superfamily protein
    E-value: 0; Score: 99.82

 

InterPro Scan Digest

Program Description E-value
ProfileScan Dual specificity phosphatase, subgroup, catalytic domain 17.485
ProfileScan Dual-specific/protein-tyrosine phosphatase, conserved region 14.202
Gene3D no description 1.3e-30
PatternScan Protein-tyrosine phosphatase, active site 0
HMMSmart Dual specificity phosphatase, subgroup, catalytic domain 2.4e-07
superfamily (Phosphotyrosine protein) phosphatases II 2.9e-36
HMMPanther PTEN-RELATED PHOSPHATASE (PLIP) 6e-127
HMMPanther DUAL SPECIFICITY PROTEIN PHOSPHATASE 6e-127
HMMPanther PTEN-RELATED PHOSPHATASE (PLIP) 4.8e-69
HMMPanther DUAL SPECIFICITY PROTEIN PHOSPHATASE 4.8e-69
HMMPfam Dual specificity phosphatase, catalytic domain 3.8e-18

See the detailed result >

AT2G35680.1

Model type
Protein coding
Short Description
Phosphotyrosine protein phosphatases superfamily protein
Computational Description
Phosphotyrosine protein phosphatases superfamily protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, protein tyrosine/serine/threonine phosphatase activity; INVOLVED IN: protein amino acid dephosphorylation, dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Dual-specific/protein-tyrosine phosphatase, conserved region (InterPro:IPR000387), Dual specificity phosphatase, catalytic domain (InterPro:IPR000340), Dual specificity phosphatase, subgroup, catalytic domain (InterPro:IPR020422); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT5G56610.1); Has 1976 Blast hits to 1976 proteins in 288 species: Archae - 41; Bacteria - 150; Metazoa - 1097; Fungi - 157; Plants - 204; Viruses - 23; Other Eukaryotes - 304 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-18-M24 introduced

  • F09451 - Specific phenotypes were NOT observed.
  • F21022 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found