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RAFL09-19-B14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07998)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-B14 - full reading 
ACTTGTTTCT CTTCTTCTTC TTTATTGCTT ATAGCTTCTG AGCATCAATG 
GATCCAAATC ATAATAATCT TCTCATCTTT GTAGCCTTTT TTGTTCTCTG 
CTTAGCCACC AATGGTGTAA CCGGATATGC CACGGTCACA GGCTCGGTGT 
TTTGTGACCA ATGCAAGGAT GGAGAGAGAT CTTTGTTTGA TTTTCCTGTC 
TCTGGAATCA AGATTAGTGT CACATGTGCT GATGAAAATG GACAGGTCTA 
TATGTCAAGA GAAGAGACTA CTAATTGGCT TGGAGGATAT GTAATGAGAT 
TTGATGGGAC ACCGGATCTA AGTAACTGTT ATGCTCAAGT TTCAGACAAT 
GGAGTTCAAC AAGACCCAAG TAGCTGCAGC ATTGCTTCAG GTCCTGCACA 
GAAACTTAAA CTAATGTTTA GCTTTTTTGG GATTGAAACG TTTGCTGCGG 
ATGCCCTTCT TGCTCAACCA GTTCAGCCAA GTTCTTTTTG TCCTAAACCA 
CCCACAGCTC CGGTCATGCC TCCTCCTCAA GTTCCGGTAA TGCCTCCTCC 
TCAGGTCCCG GTTAAGCCTC ATCCTAAGGT CCCGGTTATA AGTCCTGATC 
CTCCAGCTAC ATTGCCTCCT CCTAAGGTCC CGGTTATAAG TCCTGATCCT 
CCAACTACAT TGCCTCCTCC TCTGGTCCCG GTCATAAATC TTCCTCCAGT 
TACATCACCT CCTCAGTTTA AGCTTCCACC ATTGCCTCAA ATCCCTCCAA 
TGCCATTTGT AGAGCCATCA GCTTGTTCTC ACCAGTTGTG GATGAAACCT 
GAGTACAGAT GCTACTGGAG GGCGATAGGT CCAGACACAA AGGTCGCAGT 
TGCATTTGGG CTAGTAGCCG GGAGAATATA CGGCACAGAT ATGACAGTAC 
GAGAAGCGCT TGACGGGCGA GGAGAAGCCT ATAAGACACT TCTAAGAGAG 
GCAACAACTG CATTGCTCAA TTCATACAAC TCTCTAGGAT TTCCTTATAA 
TTCCGTCGCT GTGATCACAT ATACCAATCT GGCTCTCCTC GGGAATTCGG 
AACACGATGT CCTCATGACT GCTATTCGTT TCATCAAGGC TAATTCCGGG 
ACCTGCAGAT TCACAGTCTG CAATTGATTG AATGTGTTTT CAATACTTAT 
ATACTCTACA CTCTTTCTTT CTCTTTTACA TTGTTCTTGG GTCCTTTTGT 
AATACTATAA AAGTCTATAC CTGGATTCAT TGGAGAATTT ATGGACTATT 
ATTGTATCCC TATTTATACT CGG

Gene models with high sequence identity

  1. AT2G16630.1 [+] show detail - Pollen Ole e 1 allergen and extensin family protein
    E-value: 0; Score: 99.92

 

InterPro Scan Digest

Program Description E-value
HMMPfam Pollen Ole e 1 allergen/extensin 3.3e-14
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10
FPrintScan PRICHEXTENSN 2.6e-10

See the detailed result >

AT2G16630.1

Model type
Protein coding
Short Description
Pollen Ole e 1 allergen and extensin family protein
Computational Description
Pollen Ole e 1 allergen and extensin family protein; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-B14 introduced

  • F14426 - Specific phenotypes were NOT observed.
  • F25634 - rosette leaf::abnormal / cauline leaf::abnormal

Mutant lines with disrupted or induced

2 mutant lines found