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  3. RAFL09-19-C07

RAFL09-19-C07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05488)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-C07 - full reading 
GACTTTGTCA ATTCTCTGAC AATTGTAATT TCGTTCTCCT GAAACCGTGG 
GAGAAAAGAA TCTGCATTTC CTTCAAGTTC AACGTCTTCC AGATTTTGAA 
ATGGCAGATG GGAACACAAG ATTCACGGTG GATGAAGCTC TTGTGGCGAT 
GGGATTTGGC AAGTTCCAAA TTTACGTCCT TGCTTACGCT GGAATGGGTT 
GGGTTGCAGA GGCCATGGAG ATGATGCTTC TCTCTTTCGT TGGACCTGCT 
GTTCAATCTC TCTGGAATCT CTCTGCACGC CAGGAAAGCT TAATAACTAG 
CGTCGTTTTT GCTGGCATGC TCATTGGTGC TTACTCTTGG GGCATTGTTT 
CTGATAAACA TGGCCGCAGG AAAGGGTTTA TCATAACTGC GGTGGTGACT 
TTTGTAGCTG GTTTCTTGAG CGCATTTTCA CCTAACTACA TGTGGTTGAT 
CATTCTTCGC TGTTTGGTTG GTCTTGGGTT GGGAGGAGGT CCTGTTCTTG 
CTTCTTGGTA TCTTGAATTC ATACCTGCAC CAAGCCGAGG GACTTGGATG 
GTTGTTTTCT CAGCTTTCTG GACCGTTGGA ACCATATTTG AGGCTTCCCT 
TGCTTGGTTA GTCATGCCAA GATTGGGTTG GAGGTGGTTA CTTGCATTCT 
CTTCGGTACC TTCTTCGTTA CTTCTTCTGT TCTATAGGTG GACATCTGAG 
TCTCCTCGGT ACTTAATTCT ACAAGGCCGG AAAGCCGAAG CTCTTGCCAT 
ATTAGAGAAG ATTGCGAGGA TGAACAAAAC CCAACTACCT CCGGGTGTTC 
TCAGTTCAGA GTTGGAGACC GAGCTGGAAG AGAATAAAAA CATTCCAACA 
GAAAATACTC ATCTTCTCAA GGCTGGAGAA AGTGGAGAAG CGGTTGCTGT 
GTCTAAGATT GTACTAAAAG CTGATAAGGA ACCAGGTTTC TCATTACTAG 
CTCTTCTATC TCCAACGCTA ATGAAGCGGA CTTTGCTACT ATGGGTTGTG 
TTCTTTGGAA ATGCGTTTGC TTACTATGGC GTTGTCCTTC TCACCACCGA 
GCTGAACAAT TCCCATAACC GCTGCTATCC AACCGAGAAA CAGTTGCGAA 
ATTCAAACGA TGTTAACTAC AGAGACGTTT TCATTGCCAG TTTCGCAGAG 
TTTCCAGGTC TACTGATATC AGCAGCAATG GTGGATAGAC TTGGACGAAA 
AGCTTCAATG GCATCAATGT TGTTCACATG TTGCATTTTC CTTCTCCCTC 
TGTTATCCCA TCAGTCTCCA TTCATAACCA CCGTTCTTCT CTTCGGCGGC 
CGTATCTGCA TCTCGGCAGC TTTCACAGTG GTTTACATAT ATGCTCCGGA 
GATATATCCA ACGGCAGTGA GAACAACCGG AGTAGGAGTA GGGAGCTCGG 
TAGGAAGAAT TGGAGGAATC TTATGTCCAC TCGTAGCCGT TGGATTAGTT 
CACGGATGCC ATCAGACGAT CGCTGTTCTT CTGTTTGAGG TTGTGATTCT 
TGTGTCAGGA ATTTGCGTTT GTCTCTTCCC TTTCGAGACA AGTGGTCGTG 
ACCTGACAGA TAGTATCTCT GCGTCCAAAG AACCACCTTC AGCCTCCGTA 
TAGCAAAATT CTTCTGACCA TCGTAGTTGT TTAGTTGTTG AAGGAAAGAA 
AAGAAAGAAA ACAGAGTGAT TACAAATAGA GATATTCACA GATTAGTGAT 
ATGATATGAT CCTGTGTAAG ACATTATACA AACTTGTAAT TTTGTAAAAC 
AAAGTCTCCT ATACGGTACA TTTAAATATG ATAACTTTTT GTTGATCAAA 
AG

Gene models with high sequence identity

  1. AT3G13050.1 [+] show detail - Major facilitator superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan MFS 36.708
HMMPanther SUGAR TRANSPORTER 6.9e-221
HMMPanther SUGAR TRANSPORTER 6.9e-221
PatternScan Sugar transporter, conserved site 0
HMMPfam General substrate transporter 1.8e-39
superfamily Major facilitator superfamily, general substrate transporter 6.4e-72

See the detailed result >

AT3G13050.1

Model type
Protein coding
Short Description
Major facilitator superfamily protein
Computational Description
Major facilitator superfamily protein; FUNCTIONS IN: carbohydrate transmembrane transporter activity, transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: integral to membrane, membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: organic cation/carnitine transporter4 (TAIR:AT3G20660.1); Has 38439 Blast hits to 37687 proteins in 2363 species: Archae - 738; Bacteria - 22281; Metazoa - 5017; Fungi - 6515; Plants - 2234; Viruses - 0; Other Eukaryotes - 1654 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-C07 introduced

  • F02824 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

13 mutant lines found