1. Home
  2. Full-length cDNAs
  3. RAFL09-19-C22

RAFL09-19-C22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05490)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-C22 - full reading 
TGCAGGTTTT GAATTTGAAA ACGGAGTTAG AGGAAGCTCG TAATTCAAAT 
GTAGAGCTTG AGTTGAATAA TAGGAAGCTT TCTCAGGATC TTGTTTCAGC 
TGAAGCTAAG ATCTCATCTC TTTCTTCTAA CGACAAGCCA GCTAAAGAAC 
ATCAAAACAG CAGATTCAAA GATATCCAGA GGTTAATAGC TAGCAAATTA 
GAGCAACCCA AGGTTAAGAA GGAGGTAGCA GTAGAGTCAT CAAGATTATC 
TCCACCATCA CCTTCTCCTT CAAGATTACC GCCAACACCG CCATTACCGA 
AGTTTTTGGT GTCTCCAGCT AGCAGTTTAG GTAAAAGAGA TGAAAATTCT 
TCACCCTTTG CACCTCCAAC ACCACCGCCT CCGCCGCCAC CACCACCACC 
TAGACCTCTT GCTAAAGCAG CTCGTGCTCA GAAGTCTCCT CCAGTTTCAC 
AGCTATTTCA GTTGTTGAAT AAGCAAGATA ATAGTAGAAA CCTTTCTCAG 
TCTGTTAATG GGAATAAGTC TCAAGTTAAC AGTGCTCACA ACAGTATAGT 
CGGAGAAATT CAAAACCGTT CTGCGCATCT CATCGCTATA AAAGCTGATA 
TAGAGACAAA AGGGGAGTTT ATCAATGATC TTATCCAGAA AGTTCTGACC 
ACTTGTTTTT CGGATATGGA AGATGTCATG AAATTTGTGG ATTGGCTTGA 
TAAAGAACTG GCAACTCTGG CTGATGAGCG TGCTGTGCTT AAGCATTTCA 
AGTGGCCTGA GAAGAAAGCC GATACCCTGC AAGAGGCTGC AGTTGAATAC 
CGTGAGCTAA AGAAACTGGA AAAAGAACTT TCTTCCTACT CTGATGATCC 
GAACATTCAC TACGGTGTTG CCCTGAAGAA AATGGCCAAC TTACTAGACA 
AGTCGGAGCA GAGGATAAGG AGGCTAGTCA GATTACGTGG CTCATCCATG 
CGTTCTTACC AGGACTTTAA GATCCCAGTC GAGTGGATGC TTGACTCGGG 
AATGATATGC AAGATCAAAA GAGCATCGAT CAAACTTGCG AAAACCTACA 
TGAATAGAGT AGCGAATGAG CTGCAATCAG CTCGTAACTT GGATAGAGAG 
TCTACTAAAG AAGCATTGCT TCTTCAAGGC GTCCGATTTG CTTACAGAAC 
GCACCAGTTT GCGGGAGGGC TCGATCCAGA GACATTGTGT GCATTAGAAG 
AGATTAAGCA ACGTGTTCCG AGTCATCTCC GGCTGGCACG GGGGAATATG 
GCCGGAAATC TGTCGTAGAA AAGTAATCAG AGAAATGTGA GGCATATGGG 
CTGTGGTTCT GGCTACAAAA TTCGTTATTT GTGTTAATAG TGTTTGGTGA 
GTCAGGTTGT GTCCCATTTA ATAATAATGT TATAATGTAT CTAAAATGTT 
CCTCCAGTGA ATTACTCAAT TAATTTTTGC GCC

Gene models with high sequence identity

  1. AT1G48280.1 [+] show detail - hydroxyproline-rich glycoprotein family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT1G48280.1

Model type
Protein coding
Short Description
hydroxyproline-rich glycoprotein family protein
Computational Description
hydroxyproline-rich glycoprotein family protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Hydroxyproline-rich glycoprotein family protein (TAIR:AT3G25690.3); Has 10788 Blast hits to 7587 proteins in 614 species: Archae - 16; Bacteria - 992; Metazoa - 4057; Fungi - 1231; Plants - 2229; Viruses - 567; Other Eukaryotes - 1696 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-C22 introduced

  • F09817 - seed::increased size / seed::increased length
  • F11516 - Specific phenotypes were NOT observed.
  • F27504 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found