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  3. RAFL09-19-E22

RAFL09-19-E22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05501)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-E22 - full reading 
AAGAGACTCT CTCCTCTTCA CTTCGCGAAC TCAGAAAAAT CAAATCTTTC 
TCTCTCTCTC TCTCGTTGAA AACCCATTTC TGTATTGTGT TGAAGCTACG 
TTACTACTAA GAAGAAGTGA AGCAAAAACA GAGGTTTTTG AAAATGGAGA 
AAAAACAAGG CTTTTTCTCT GCTCTCAGAC ACGAAGTTGT GAGAGGTCTT 
TCGCCGTCAC GATCCAGAGC AAGGTCTCGT TCCGTTAGTC CCGCTAGGTC 
TAGTTCACCC ATGTCAGCTC TCACTTGGGG AAGAAAGAAC TTAACTGGAG 
GAGGCGGTGG TGGTGGTGGC GGAGGTTACT ATTTAGCGCA ACCAGAGCAG 
TTAATTGGGA GATCCGGAAG TTTGAGACCT GTAATGGAAG GTCCTGATCC 
AGATGAAGGA GGAGGAGGTG GTAATATAGG AGAATCTAAA CGACTCGGGT 
CGGGTTTAGG TCACTGGGTT AAAGGGCAGC TGTCTCGTGC TCCGTCTGTT 
GCTGCGACGG CGGCTTATCG GAGAAATGAT CTGAGACTTC TTCTTGGTGT 
AATGGGAGCT CCTCTTGCTC CTATTCATGT CTCTTCCTCT GATCCTTTGC 
CTCATCTTAG TATCAAAAAC ACTCCAATCG AAACATCATC TGCTCAGTAT 
ATTCTTCAAC AGTACACTGC AGCTTCTGGT GGTCAGAAGC TACAAAACTC 
CATTAAAAAC GCTTATGCGA TGGGGAAGCT CAAGATGATT ACTTCAGAGC 
TTGAAACTGC TACAAGAACC GTTAGGAATC GAAACCCATC TAAGGCTGAG 
ACTGGAGGTT TTGTTCTTTG GCAGATGAAT CCAGACATGT GGTATGTTGA 
GCTTGCTGTT GGGGGTAGTA AGGTTCGTGC TGGCTGCAAT GGCAAGCTTG 
TATGGAGACA CACTCCTTGG CTCGGATCTC ATACTGCTAA AGGACCTGTC 
AGACCTCTCC GCCGTGGACT TCAGGGACTA GATCCGAGAA CAACTGCTGC 
AATGTTTGCG GAAGCGAAGT GTATAGGAGA GAAGAAGGTG AATGGTGAAG 
ATTGCTTCAT TTTGAAGTTA TGCACTGACC CTGAAACACT AAAAGCGAGG 
AGCGAAGGAC CGGCTGAGAT CATTAGGCAT GTCCTCTTTG GCTACTTCAG 
TCAGAAAACA GGGCTCTTGG TTCACATTGA GGATTCACAT TTGACCCGGA 
TTCAATCTAA CGGTGGAGAG ACTGTTTTCT GGGAGACCAC ATACAACTCG 
TCCCTAGACG ATTACCGTCA GGTCGAAGGA ATCATGATTG CTCACTCGGG 
ACATTCAGTT GTGACACTAT TCAGATTTGG GGAAGTGGCG ACGAGCCATA 
CGAGGACAAA GATGGAAGAA AGCTGGACGA TTGAGGAAGT TGCGTTTAAC 
GTTCCTGGTC TGTCTCTCGA TTGCTTTATA CCACCAGCTG ATCTTAAGAC 
CGGTTCTTTA ACCGAATCCT GCGAGTACCC ACAAGAGGAA AGAGGCAAGA 
ACAACACACT CGCATTGTCT GCAGCTCACA GGGCCAAAGT TGCAGCCTTG 
GAGAACGGGA GCTTGGAAGA TCACCGCCCG GTTTGGCATA CTGATGTCTA 
ACGCTTAAAG AGAGAGCTTA TGACTAAAAA CAACCTTTGA AGGTAGCATT 
AGCCAAGGAT GATTCTCAAA GATCAGATGC AATGTGTTTA TATGCCGGTA 
ACTCAAGCTA ACCCCTTTTA GCAGCTTTAT CGATTAGGAA TCAGGTTCGT 
TAGCTTAACC GATGATTTGC GGGTTCAAAC AGAACTCAAA TGAATCATCC 
TTTTTACTCA AAATCTCAGG AGAATGAGAT GGAGTTTGGA TTTGGTTTTT 
ACTTAATCTT TCAGTTTGGG TTTATTTTTT TAATTCTCAC CTTCAATATT 
TTTGAGTAAG GTGAAGGCAA GAGAAGGAGA ATTGCCCTGC TTTTACTTAT 
ATAGTTTCTA GCATTTTAAG TGTTTGTGTT TTAATCAACC CTCTAACTAC 
GAATCTTGAA TTGTTCCATC TTTCTTTTTC AATCTATGGA GATATGTTTG 
GCTTTTTTAC CTTTTCTTAT CTTCAAATCT TTTGTTAATG CCTTTGGTCT 
CTCTGCCATG ATCTAATCCA ATAATCCTCT TGGC

Gene models with high sequence identity

  1. AT3G19540.1 [+] show detail - Protein of unknown function (DUF620)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT3G19540.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF620)
Computational Description
Protein of unknown function (DUF620); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF620 (InterPro:IPR006873); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF620) (TAIR:AT1G49840.1); Has 219 Blast hits to 218 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-E22 introduced

  • F10205 - Specific phenotypes were NOT observed.
  • F12239 - stem::increased thickness / stem::abnormal / cauline leaf::epinastic / stem::abnormal / stem::abnormal
  • F16424 - Specific phenotypes were NOT observed.
  • F28406 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found