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  3. RAFL09-19-F01

RAFL09-19-F01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05503)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-F01 - full reading
AAAAAACTTC AAGAAAAAAA GATTCTTCAA AAGAGCAAAA AATCAATGGA 
GAGAGCAAAG TCGAGGAAGC CTCATATCAT GATGATACCA TACCCACTTC
AAGGTCACGT TATCCCTTTT GTCCACTTAG CCATCAAACT TGCTTCTCAT
GGCTTCACCA TCACTTTCGT CAACACCGAC TCCATCCACC ACCACATCTC
CACCGCTCAC CAAGATGACG CCGGTGACAT CTTCTCCGCC GCTCGCAGCT
CCGGCCAGCA CGACATACGT TACACCACCG TGAGCGACGG CTTCCCTTTA
GACTTTGACC GGTCACTGAA CCATGACCAG TTTTTCGAAG GCATTCTCCA
CGTCTTCTCT GCCCACGTGG ATGATCTCAT CGCCAAACTC TCCCGCCGTG
ATGATCCTCC CGTGACTTGC TTGATCGCCG ACACGTTTTA TGTTTGGTCA
TCTATGATTT GCGACAAGCA CAACCTTGTA AATGTCTCGT TTTGGACCGA
ACCTGCCTTG GTCCTCAATC TCTATTATCA CATGGATCTC CTCATATCTA
ACGGTCATTT CAAATCTCTT GATAATCGTA AAGACGTGAT CGATTACGTA
CCAGGGGTTA AAGCAATAGA ACCAAAGGAC TTGATGTCAT ATCTTCAAGT
AAGCGACAAA GACGTAGACA CAAATACAGT AGTATACAGA ATATTATTCA
AGGCCTTTAA AGACGTCAAG AGAGCCGACT TCGTCGTATG CAACACGGTG
CAAGAGCTCG AACCAGACTC TCTCTCGGCT CTACAAGCCA AACAACCGGT
TTACGCTATC GGTCCGGTTT TCTCAACTGA TTCGGTAGTT CCCACAAGCT
TATGGGCCGA GTCAGACTGT ACCGAGTGGC TTAAGGGCCG GCCCACTGGG
TCAGTTCTCT ACGTCTCGTT TGGTAGCTAT GCACATGTTG GTAAGAAGGA
GATTGTTGAG ATAGCTCATG GGCTTTTGCT TAGTGGGATT AGTTTCATTT
GGGTTTTACG TCCGGATATA GTTGGATCCA ACGTACCAGA TTTTCTTCCA
GCCGGGTTTG TGGACCAAGC CCAAGATCGA GGTCTTGTGG TCCAATGGTG
CTGCCAGATG GAAGTTATTT CAAATCCGGC CGTGGGAGGG TTTTTCACAC
ATTGTGGATG GAATTCAATT CTAGAGAGCG TTTGGTGTGG TTTGCCTTTG
TTGTGTTATC CACTTTTGAC AGATCAGTTC ACGAATAGGA AGCTTGTGGT
CGATGATTGG TGCATTGGGA TTAATCTTTG TGAGAAGAAG ACAATCACAA
GGGACCAAGT CTCAGCGAAT GTTAAAAGAT TGATGAATGG AGAAACTTCA
AGTGAGCTAA GAAACAATGT TGAAAAGGTT AAACGTCATC TCAAAGATGC
GGTTACAACC GTTGGATCTT CGGAGACGAA TTTTAACTTG TTTGTTAGTG
AGGTCCGAAA TAGAATAGAA ACTAAATTGT GTAATGTAAA TGGACTAGAA
ATAAGTCCAT CAAACTAAAC AATC

Gene models with high sequence identity

  1. AT2G36970.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 9.2e-45
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
HMMPanther UDP-GLUCOSYLTRANSFERASE 1.3e-126
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.3e-126
Gene3D no description 6.8e-13
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 3.8e-22

See the detailed result >

AT2G36970.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G28080.1); Has 6237 Blast hits to 6170 proteins in 304 species: Archae - 0; Bacteria - 63; Metazoa - 975; Fungi - 25; Plants - 5115; Viruses - 22; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-F01 introduced

  • F00307 - Specific phenotypes were NOT observed.
  • F03342 - Specific phenotypes were NOT observed.
  • F04147 - Specific phenotypes were NOT observed.
  • F04949 - Specific phenotypes were NOT observed.
  • F10445 - Specific phenotypes were NOT observed.
  • F16219 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::abnormal
  • F20635 - Specific phenotypes were NOT observed.
  • F29827 - Specific phenotypes were NOT observed.
  • F30403 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found