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  3. RAFL09-19-F01

RAFL09-19-F01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05503)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-F01 - full reading 
AAAAAACTTC AAGAAAAAAA GATTCTTCAA AAGAGCAAAA AATCAATGGA 
GAGAGCAAAG TCGAGGAAGC CTCATATCAT GATGATACCA TACCCACTTC 
AAGGTCACGT TATCCCTTTT GTCCACTTAG CCATCAAACT TGCTTCTCAT 
GGCTTCACCA TCACTTTCGT CAACACCGAC TCCATCCACC ACCACATCTC 
CACCGCTCAC CAAGATGACG CCGGTGACAT CTTCTCCGCC GCTCGCAGCT 
CCGGCCAGCA CGACATACGT TACACCACCG TGAGCGACGG CTTCCCTTTA 
GACTTTGACC GGTCACTGAA CCATGACCAG TTTTTCGAAG GCATTCTCCA 
CGTCTTCTCT GCCCACGTGG ATGATCTCAT CGCCAAACTC TCCCGCCGTG 
ATGATCCTCC CGTGACTTGC TTGATCGCCG ACACGTTTTA TGTTTGGTCA 
TCTATGATTT GCGACAAGCA CAACCTTGTA AATGTCTCGT TTTGGACCGA 
ACCTGCCTTG GTCCTCAATC TCTATTATCA CATGGATCTC CTCATATCTA 
ACGGTCATTT CAAATCTCTT GATAATCGTA AAGACGTGAT CGATTACGTA 
CCAGGGGTTA AAGCAATAGA ACCAAAGGAC TTGATGTCAT ATCTTCAAGT 
AAGCGACAAA GACGTAGACA CAAATACAGT AGTATACAGA ATATTATTCA 
AGGCCTTTAA AGACGTCAAG AGAGCCGACT TCGTCGTATG CAACACGGTG 
CAAGAGCTCG AACCAGACTC TCTCTCGGCT CTACAAGCCA AACAACCGGT 
TTACGCTATC GGTCCGGTTT TCTCAACTGA TTCGGTAGTT CCCACAAGCT 
TATGGGCCGA GTCAGACTGT ACCGAGTGGC TTAAGGGCCG GCCCACTGGG 
TCAGTTCTCT ACGTCTCGTT TGGTAGCTAT GCACATGTTG GTAAGAAGGA 
GATTGTTGAG ATAGCTCATG GGCTTTTGCT TAGTGGGATT AGTTTCATTT 
GGGTTTTACG TCCGGATATA GTTGGATCCA ACGTACCAGA TTTTCTTCCA 
GCCGGGTTTG TGGACCAAGC CCAAGATCGA GGTCTTGTGG TCCAATGGTG 
CTGCCAGATG GAAGTTATTT CAAATCCGGC CGTGGGAGGG TTTTTCACAC 
ATTGTGGATG GAATTCAATT CTAGAGAGCG TTTGGTGTGG TTTGCCTTTG 
TTGTGTTATC CACTTTTGAC AGATCAGTTC ACGAATAGGA AGCTTGTGGT 
CGATGATTGG TGCATTGGGA TTAATCTTTG TGAGAAGAAG ACAATCACAA 
GGGACCAAGT CTCAGCGAAT GTTAAAAGAT TGATGAATGG AGAAACTTCA 
AGTGAGCTAA GAAACAATGT TGAAAAGGTT AAACGTCATC TCAAAGATGC 
GGTTACAACC GTTGGATCTT CGGAGACGAA TTTTAACTTG TTTGTTAGTG 
AGGTCCGAAA TAGAATAGAA ACTAAATTGT GTAATGTAAA TGGACTAGAA 
ATAAGTCCAT CAAACTAAAC AATC

Gene models with high sequence identity

  1. AT2G36970.1 [+] show detail - UDP-Glycosyltransferase superfamily protein
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
superfamily UDP-Glycosyltransferase/glycogen phosphorylas 9.2e-45
PatternScan UDP-glucuronosyl/UDP-glucosyltransferase 0
HMMPanther UDP-GLUCOSYLTRANSFERASE 1.3e-126
HMMPanther UDP-glucuronosyl/UDP-glucosyltransferase 1.3e-126
Gene3D no description 0.00000000000068
HMMPfam UDP-glucuronosyl/UDP-glucosyltransferase 3.8e-22

See the detailed result >

AT2G36970.1

Model type
Protein coding
Short Description
UDP-Glycosyltransferase superfamily protein
Computational Description
UDP-Glycosyltransferase superfamily protein; FUNCTIONS IN: UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups; INVOLVED IN: metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: UDP-glucuronosyl/UDP-glucosyltransferase (InterPro:IPR002213); BEST Arabidopsis thaliana protein match is: UDP-Glycosyltransferase superfamily protein (TAIR:AT2G28080.1); Has 6237 Blast hits to 6170 proteins in 304 species: Archae - 0; Bacteria - 63; Metazoa - 975; Fungi - 25; Plants - 5115; Viruses - 22; Other Eukaryotes - 37 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-F01 introduced

  • F00307 - Specific phenotypes were NOT observed.
  • F03342 - Specific phenotypes were NOT observed.
  • F04147 - Specific phenotypes were NOT observed.
  • F04949 - Specific phenotypes were NOT observed.
  • F10445 - Specific phenotypes were NOT observed.
  • F16219 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / cauline leaf::abnormal
  • F20635 - Specific phenotypes were NOT observed.
  • F29827 - Specific phenotypes were NOT observed.
  • F30403 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found