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RAFL09-19-G15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05509)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-G15 - full reading 
GAACTTGTCT GAGTTCCAAT GCGGCTGCTG CTATCATCTG ATCCCCAACC 
CGAACTTACG TCTACATGTA CCTCTCATAG TTGCGGCTGG AAGCCTTACT 
CTCATTCCAA TGACTTTGCT GCCAACGCGT TCCTCCTTCT CATCATCCTC 
TTCTGTTCTT TCATATGCGT CCTCTCTCTC CACGCTGCTA TCCGTTGTTG 
CCTCCGTCCA GTCCTCCAAC ATGTCCCTAA GCCCGACCCG GACCTTGAGG 
CCACCCATCC AGACGCTCCC CCGACACTTG TCTACTCCCC GGGCCTAAAC 
CTAGCAGGCA ATGAAGCAGA GTGCATCATT TGTTTGTCTG AATTCCAAGA 
CGGTGACACC TTACGCGTGT TGGAGAGATG CAAACATGGA TTCCACGTTT 
ATTGCATCCA GAAGTGGCTC TCCTCATCCC ATTCTTCTTG TCCCACTTGC 
CGGACAAACA TCTTCTCCTC CCCACCTCAA CTTCACTCAC AAAGCTTACC 
ACTAACGAGT ACACCTTAGT CAGATGGTAG CTAGTTCCTG GTCTTGCCCA 
CTTTTTTTTT ATCTTTATTT TCTTTACAAC TTCACACCAC TATCATGTTT 
TACAAGTTAG TTTATTTTTT ACCTTTCTCC TTTTATATTC CT

Gene models with high sequence identity

  1. AT4G17245.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RING/U-box 3.2e-16
HMMPfam Zinc finger, C3HC4 RING-type 0.000000011
HMMSmart Zinc finger, RING-type 0.00000029
Gene3D no description 0.00000000000011
ProfileScan Zinc finger, RING-type 12.711
HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 0.000000000000013

See the detailed result >

AT4G17245.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G47610.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-G15 introduced

  • F03232 - Specific phenotypes were NOT observed.
  • F07831 - Specific phenotypes were NOT observed.
  • F22730 - Specific phenotypes were NOT observed.
  • F23615 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

4 mutant lines found