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  3. RAFL09-19-G24

RAFL09-19-G24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05511)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-G24 - full reading 
AAAACAGAAA GGCCAGAGAG ACGAAAGAGA GAGGCATTAG GGTTTAGGAT 
TAGATTTTAG AAAAGGGTTT AGATCTCTAC CAACTGGTTT GTTAAGAACA 
TAATCTCCTT ACCACATTTT TACTCTTGAA AACATTTTGA TCTGTTTTTG 
TTATCTTCAC CAAAAGACTT GACTCCAAGA AACAAGAAGA AGAATCAAGA 
AACAAGTTCA AGAACCAGCT TTTAATGAAA TCTCTACTTC AAAAAGGAAA 
CTTGCTTTAA GGAGGATGGA TCTTTTGTTT TCTTGAATCT TTTGTGTGGG 
TAAAACATTT TGTATTATCA AGATTTTGAT TTGAGGAGAT AAAGAGTTTG 
TTGTTAAGTT TGTGTTCTTG GGATCATCAA GAGTTAAAAC AAAAAAAAAA 
GACATTTCTT TTTTCCTTCT TCAATTTGAG ATTTAGTGTC TCCTTTAACA 
CCCACAAAGC CAGCAGATGC TTTCCTGATG ACTCCTTGTT TGATCTGATC 
ATAAGAAGAA GAAGACTATG GCCACTTATT ACAAAACTGG CTCAAGTGAG 
ATTTATTCCA GACCAGAATT TGTCCCTGGA AACGCAATGA ACTACACAAA 
TTCTTTCACA GAGACATTTC CTAGAGATTC AACTAATAAT GTGTCACCTT 
CAAAAGAGAT TCAAGTGTTG TCAAGCCTTG GTGGAGTTTC ACAAATGGTT 
GAGATTCAAG ATTCTGGTTC TTGGAGAGAT CAAGAAGACA ATGACAGGAA 
TCGCTTCCCG GTGATGAGGC GTCTTGGCCT CAGCTCGCAG ATTGAGACAT 
CGAGAGGCAA TAATAACAAT GAGTATGCAA CACAGGTTGT TTCGGGATTT 
ACTCGAACCA TTCACAACTC AAAGTATCTC AAAGCTGCTC AAGAGCTTCT 
TGATGAAACT GTTAATGTTA AGAAAGCTCT AAAGCAGTTT CAGCCAGAGG 
GAGATAAGAT TAATGAAGTG AAAGAGAAGA ATCTTCAGAC GAATACTGCT 
GAAATCCCTC AAGCAGAGAG GCAAGAATTG CAGAGCAAGT TGTCGAAACT 
TTTATCGATA TTAGACGAGG TGGATAGAAA TTACAAGCAG TATTACCATC 
AGATGCAGAT AGTCGTGTCG TCTTTCGATG TAATAGCCGG ATGTGGAGCA 
GCCAAACCAT ACACAGCCCT TGCGCTTCAG ACCATCTCGA GGCATTTCCG 
TTGCTTAAGG GATGCGATAT CCGGACAAAT CTTGGTGATA AGGAAAAGTT 
TAGGAGGGGA ACAGGATGGA TCAGATGGGA GAGGAGTGGG GATAAGCAGG 
TTAAGGAATG TTGATCAACA GGTAAGGCAA CAAAGAGCGT TGCAGCGGTT 
AGGTGTGATG CAACCTCACA CTTGGCGGCC TCAACGCGGT TTACCAGATT 
CTTCTGTTTT GGTTCTCCGT GCTTGGCTAT TTGAGCATTT CCTCCACCCT 
TATCCAAAGG ATTCAGACAA GATCATGCTC GCTAGACAAA CGGGGTTGAG 
CCGAGGCCAG GTATCGAACT GGTTCATAAA TGCGCGTGTG CGTCTCTGGA 
AACCGATGGT GGAGGAGATG TACAAGGAGG AATTCACAGA TGCATTGCAG 
GAGAATGATC CCAACCAGTC TTCTGAAAAC ACACCAGAAA TCACCGAGAT 
TCAAGAGCTG CAAACTGAGT CTAGTTCCAA CAATGGGCAT GTACCTGGTG 
TGGCAAGCAG TAGCATGAGA CAAAACACAG TGGCCCATGG TGGTGACCGG 
TTCATGATGG TGACTGACAT GACAAGAAAT GGTAATGGTG GGATGTCTTT 
AACGTTGGGG ATTCAGAATT CCGATGCTCG TGGCGATGTT CCTATGTCCG 
GTGGGATAGA TAACTACAAG AATATCATCT CGGGAACCGA TCTACAGTAC 
TTAAACTCTC GCAACCACCA GCACCAGATT GGCTCTTCAC AATTGTTGCA 
TGATTTTGTA GCTTGAGGAG AATAGAAAGG TGTAGAAATG GATTCTTTTG 
TGAAAGTAAA CCCAAAAAAC GAAATTGTAG ATTAATGAGA AAACATGAGG 
AGACAATCTG AGATTAGACA CGATCTGTTT CATATTTAAA CATGAGGAGA 
CCTAATTATA TGGTTAGAGG TACACG

Gene models with high sequence identity

  1. AT2G16400.1 [+] show detail - BEL1-like homeodomain 7
    E-value: 0; Score: 99.76

 

InterPro Scan Digest

Program Description E-value
HMMSmart POX 8.9e-72
HMMSmart Homeobox 5.9e-09
Gene3D Homeodomain-related 5.4e-24
HMMPfam POX 7.3e-45
HMMPfam Homeobox 3.6e-06
Coil coiled-coil 0
superfamily Homeodomain-like 3.7e-17
ProfileScan Homeobox 11.564
HMMPanther BEL1 HOMEOTIC PROTEIN 6.7e-131
HMMPanther HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 6.7e-131

See the detailed result >

AT2G16400.1

Model type
Protein coding
Short Description
BEL1-like homeodomain 7
Computational Description
BEL1-like homeodomain 7 (BLH7); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 4799 Blast hits to 4799 proteins in 334 species: Archae - 0; Bacteria - 20; Metazoa - 1820; Fungi - 319; Plants - 2475; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-G24 introduced

  • F20735 - Specific phenotypes were NOT observed.
  • F23836 - Specific phenotypes were NOT observed.
  • F27909 - Specific phenotypes were NOT observed.
  • F28112 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found