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  3. RAFL09-19-H14

RAFL09-19-H14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05513)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-H14 - full reading 
AAAATTATTT TACTTAACAA AAAAAAAAAC AAATTTTTAT TTTATCTTCC 
ATTTTTTTTC CCCGAAATTC TCGACGGTGT TTTCCGGCGA TTCATTTTCG 
ATGCCTGAAT CGCCGATTAC CTGAATTCAC TGAAACCCTA AAACCCTAAA 
GTTACTGTAG TTATTAAAGC TGTGTTCTTG ATTCCAAATC TTTGCCTAAA 
GATTCGTGCT TTTTGTTTAC TTCCGATTTG ATCTACTCAA TCTCTGGAGG 
AAGAAGAAGT TTCAGAGATC TATTTTTGAA GCTGTGTTTG TAATTTTCCC 
CAATTTATCA ATAATGATGA TCTTTTGGTG CTTGAATATG GAATGCTTGC 
GGGAACGGTG TTAGTTTCCT TTTGTAGAGC TGTCATATAT TGTGTTGGTT 
TCTTTCTACA TGGAAGCTTA CAGAGAGGAA GCTCTCAGAG TGAAACAGAT 
CGCTGAGAGG AGATTTGCGG AGAAAGATTT CACAAGCGCT AGGAGTTATG 
CGTTGAAAGC GAAGTCTTTG TTTCCTGATT TGGAAGGTTT ATCTCAGATG 
GTTGCGACGT TTGAAGTTTA TTTAGCTTCT CAGACTCGAA GCGGTGGTCA 
GATTGATTAT TACGCGGTAC TTGGACTGAA ACCGTCTGCG GGGAAAAGAG 
AAGTGAAGAA ACAGTATAAG AAGATGGCTG TATTGCTTCA TCCTGATAAG 
AACAAATGCA TTGGAGCTGA TGGTGCATTT CATCTCATAT CTGAAGCTTG 
GAGTTTCTTG TCTAATGAGT TTAATAAAAG CACTTTTTAT TACAAAAGAA 
AGAAGCATAT TGACTCCACT GAGGTTCAGA AGCATAGCAC AGAGTACATG 
CCTGGGACTG GGACTGGGAC GGGGACTGCA GTATTTGATC GGTTTCCACC 
ATCTTCAGAA AGGCTTGATA CTTTCTGGAC TGTATGCACC TCTTGCAAAG 
TTCAGTATGA GTATCTGAGG AAGTATGTGA ATAAGAGGCT TTCATGTAAG 
AACTGTCGTG GAGCATTTAT TGCTGTAGAA ACTGGTCCAG CTCCTGTTAG 
TGCACCATTT CATTACACGC CTCCATCCCA TGCGCCTCCC TCTCATGCGC 
CTCCATCTCA TGCGCCTCCG AGTAATGGCT ATGGTGCACA TGGTTATGAT 
GCTATGTCAC GCATGCCCAC CAATTCCACG TATTTCTTAG GCCACTATCC 
TGGGCAAGGA CATGGATATG ATTATAGTAC GAATGGTTCA TATGAATGGA 
GCTCGTACTC TGGAACAACA ACCTCCCCAG GGAATCTGGA TTTGAAGCGT 
GTGTCCTCAG TGTCTAATGG GTATCCTTAT AAGCACAGCA ACTCAGTAGT 
CAGCGGGGGA ATAAATAAAG TCAAAGATGG TTCTAATGGG ACATGCTCGA 
AGAAAAGCAC ACCAGGTGGT CTGATATATC CTAATCAGAT CAGCATGTCT 
GCTCACGCGA GTGCAAATAA GGTCGGCAGA CCTGGGAAGA AAAGCAAAGT 
TTTTATGGAA GCTGCTGCTA ATGGATTTGT TGAGAACCCT CTGAGATCTG 
TTTCAGTATC AAAGACAGCG AATACAGATG CCAAAATGGA TCAGGATTAC 
AAACTTCATA TCCAAAGTTC AACTAGACGT TGGTCTGCTG CATCAGTATT 
GGATACACGG AAGCCCTTAA TTCAAAAGGC CAGAACAGAT ATCAAGCAAA 
GATTGGAGAT GATGAGATTG GCTTTAGAGG CAGCAGCGGC TGCAGAGGAT 
GCAACACCCC TTGATGAAAA AACTGTTCTC TCCTGTAAGT TGGGAGATGT 
TACAGGGCGC AAAACTAACG GGCCAATAAC AGTTCCAGAC TCTGATTTCC 
ATGACTTTGA TAAAAACAGA TCGGAGGAAT CCTTTGAGCC AAGGCAAATA 
TGGGCAATTT ATGATGAAGA TGATGGTATG CCACGCCTAT ATTGTGTGGT 
GAGGGAAGTA CTCTCAGTTC AACCCTTTAA GATTGACATT GCCTACTTAA 
GCTCTAAAAC TGACATCGAG TTTGGGTCAA TGAAATGGGT ACAATATGGG 
TTTACAAAGT CGTGTGGACA TTTCAGGATA CGAAACTCTG ACATAGTAGA 
CCATGTTAAC ATCTTTTCGC ATCTTTTAAA AGGCAAGAAG ACAGGGAGAG 
GTGGTTGTGT TCGAATCTTC CCCACAGCTG GGGAGATTTG GGCCGTCTAC 
AAGAACTGGT CACTGAACTG GGACGGATCA ACACCGGACG AAGTGAGGCA 
CCAATATGAA ATGGTCGAGA TTCTTGATGA GTATACTGAA CAGTATGGTG 
TGTGCGTTAC CCCTCTTGTT AAATTAGAGG GCTACAAAAC CGTGTATCAC 
AGGAGCACAA GGGAGGACAG TAAGAAGTGG ATACCAAGGT GTGAAATGTT 
GCGGTTTTCA CATCAAGTGC CGTCTTGGTT TCTTAAAGAT GCAACCAGCG 
GCTTTCCCGA AAACTGTTGG GACTTAGATC CAGCTGCAAT CCCCGAGGAG 
CTGCTTCACA TCGGAGCAGG AACCAATTGA TTTCAGTGAC CCTGTAAGAG 
AAAGATGGTT TCACTTTTCA GATTGAGACC AAGTGTAAGA GTTGTTGTAT 
CAGCGAAGAT TGTGGAGTTT TATGAAGGAC TATTAACACG CAAAAACCAT 
ACTGTTTGGT TCAGTGAAGC TGTTGTATTA GGCAAATGTT CAACGAGTAA 
GCAAAGCATA GTTTGACTTT TGTTTACTCT GTTTCTTCTT TTCTTTTTCT 
TTTTCGATTA TGTATTCGTT TCTTTGTTGA CCTTAGTGAT GACAGAATTT 
TTACAAGTAG AGTTATAAAT GTAGCAATTA TCTTTCC

Gene models with high sequence identity

  1. AT2G05250.1 [+] show detail - DNAJ heat shock N-terminal domain-containing protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
superfamily Heat shock protein DnaJ, N-terminal 9e-19
ProfileScan Heat shock protein DnaJ, N-terminal 14.424
HMMPfam DUF3444 2.8e-78
HMMPfam Heat shock protein DnaJ, N-terminal 9.3e-17
Gene3D Heat shock protein DnaJ, N-terminal 4.1e-14
PatternScan Heat shock protein DnaJ, conserved site 0
HMMPanther DNAJ-RELATED 3.1e-70
HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 3.1e-70
HMMSmart Heat shock protein DnaJ, N-terminal 3.1e-18

See the detailed result >

AT2G05250.1

Model type
Protein coding
Short Description
DNAJ heat shock N-terminal domain-containing protein
Computational Description
DNAJ heat shock N-terminal domain-containing protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock N-terminal domain-containing protein (TAIR:AT2G05230.1); Has 13630 Blast hits to 13432 proteins in 2557 species: Archae - 75; Bacteria - 5761; Metazoa - 2469; Fungi - 964; Plants - 1524; Viruses - 9; Other Eukaryotes - 2828 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-H14 introduced

  • F14025 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found