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RAFL09-19-I20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05515)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-I20 - full reading 
CTCCCCAGAA AAGAGAAATG AAGAGATACC AAAATCTAAA GGTAGGAGAA 
GCTTTCTCCA AAAATCGTAT TTACCCATTT GCTTGCAATG AACTAAGCTC 
CATATTGAAT CTTGCTTACT CTCTATCACC CAAAAATGTC AAAGCTTTGA 
TCTTCCAAGA TACCCTCTCC GCTTTTCGTC TTCTTCCCGA CATCAATACA 
TCAGCTGCTG TTTCAGCCGC TAACCTTCTC CTGAAGAGCG TGGAAGCGGT 
GCTCCCCAAA CAGAAGAAGA ATTTAGCCAT TGTAGAATTC AAGCAGGCAA 
AAGTAGCACT AAAGAGGCGT AGTAAGAACC GTGAGGAAGA AGATATAGAT 
ATACCTTCAC TTCCACAAGA TATCCTTATT CACATCTTCA GTTTCCTCGA 
GATATCGTCC TTAGTTTCCT CAGCTCAAGT GTCTCGCTCT TGGAACCAAG 
CAACGCATGA GAACTCTCTG TGGCAATCAC AATTTGACCT TCACTTCAAT 
CACAAAGTCT TGATTCGTAT GCAGTCCGAT ATTGACTGGA GAGAAGCCTT 
TAAGAAAGCA TACATCGCGG CTAATTCATC GGAGGCATTG AGATCTGGCC 
GGGGATACTG CAGTTACTGT GATTCTATTG TTTGGCACGA AAACTTGAGA 
TGTCTGAACA AACAATGTCG GTTGAAATCA GGCAACAAGC CACTCGACCT 
CATAACAACT CACCAGGTTG TCAACTATTT GCTGGGGATA GAGAGTTCTG 
ATGATGAAAG CGAATCAGAC GATGAAGCCT TTCCTGGACG ACTATGGAAA 
CTTTCTTACG TGCCTGATTA CTTGTAAATC ACTAAAGAGA AATATATGGC 
CCTATATGGG CTTGTGGTAC CTCATTGGAC CATTTGGCCT TACTAAGAAT 
GTTTGTGTAG TTTCAAGCCT ACTTGATTAG CTTTTTGTTT GCAGATACGT 
ATGGTAATAT TGTGTTTTAT CTAAAAGAAG TTTCTACTTT TC

Gene models with high sequence identity

  1. AT5G52880.1 [+] show detail - F-box family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CELL DIVISION CONTROL PROTEIN 4 2.5e-06
HMMPanther F-BOX AND WD40 DOMAIN PROTEIN 2.5e-06
Gene3D no description 3.1e-07
HMMSmart F-box domain, cyclin-like 1.2e-07
HMMPfam F-box domain, cyclin-like 2.4e-09
superfamily F-box domain, Skp2-like 6.8e-15
ProfileScan F-box domain, cyclin-like 12.544

See the detailed result >

AT5G52880.1

Model type
Protein coding
Short Description
F-box family protein
Computational Description
F-box family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-I20 introduced

  • F02329 - Specific phenotypes were NOT observed.
  • F21247 - cauline leaf::present in fewer numbers in organism / stem::abnormal / rosette leaf::decreased size / rosette leaf::abnormal / cauline leaf::decreased width / cauline leaf::abnormal / stem::abnormal
  • F21931 - Specific phenotypes were NOT observed.
  • F27622 - seed::increased size

Mutant lines with disrupted or induced

4 mutant lines found