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  3. RAFL09-19-K03

RAFL09-19-K03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05520)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-K03 - full reading 
AACATTCATT AATGTCAAAA CCAATTTTCT CATATCGCCA GAAACCGAAC 
ACAACGAGAT GAAGCAAACT GACGGCAGAG AAAGGAAAGC TTACCTTTCT 
CTGCTATACT TTGCAGTCAT TCTTCTTCCC GTATTCCTTC TCGGATGCTA 
TCTGTACAAC GAGAAGCAGC TGAGGGTTGG CCAGTTTCAG GAATTCAATA 
CACATAACCT GCAAGAACAC ATCACTCCAC TACAACAAAG CAAAGAAGAT 
AAAGACAAGA AGACTGATCT TGTTCCATTA GAATTCTGTG ATGTTTTCAC 
AGGAAAATGG GTTCTTGATA ACGTCACACA TCCTTTATAC AAAGAAGATG 
AATGTGAGTT TCTATCAGAG TGGGTGGCTT GTACAAGAAA CGGGAGGCCA 
GACTCTAAGT ACCAGAAATG GAGATGGCAA CCTCAAGATT GCTCTTTGCC 
AAGGTTCGAC AGTAAGCTGC TGCTAGAGAA ACTCAGGGGA AAGAAACTAA 
TGTTCATTGG TGATTCAATA CATTACAATC AGTGGCAATC CATGGTTTGT 
ATGGTTCAAT CCGTGATTCC CTCAGGCAAA AAGACCTTAA AACACACAGC 
ACAAATGTCC ATCTTCAACA TAGAGGAGTA CAATGCAACC ATATCATTTT 
ACTGGGCACC TTTCCTAGTC GAATCAAATG CTGATCCTCC AGACAAGAGA 
GACGGGAAGA CCGATCCAGT AATCATTCCT AATTCAATCT CGAAACACGG 
CGAGAACTGG AAAGACGCAG ACTACCTCAT ATTCAACACC TACATATGGT 
GGACTAGACA TTCCACGATC AAAGTTCTAA AACAAGAATC TTTCAACAAA 
GGAGACTCAA AAGAGTACAA TGAAATCGGA ATCTATATAG TATACAAACA 
AGTGTTATCA ACATGGACAA AATGGCTAGA ACAAAACATC AACCCAAGTC 
AAACATCTAT CTTCTTCAGC AGCATGTCAC CAACTCATAT CAGAAGTTCA 
GATTGGGGAT TCAATGAAGG AAGCAAATGT GAAAAAGAGA CAGAACCAAT 
ACTAAACATG TCAAAACCAA TAAATGTTGG AACAAATCGA AGACTTTACG 
AAATCGCACT GAATGCGACC AAATCTACAA AAGTGCCGAT TCATTTCCTC 
AACATAACGA CTATGTCAGA GTATAGAAAA GATGGGCATA CCTCATTTTA 
CGGTTCGATA AATGGGAAAC TCATGACGCC GGAGCAGAAG TTAGATCCGA 
GAACTTTTGC TGATTGTTAT CATTGGTGTC TTCCGGGATT GCCTGATTCA 
TGGAACGAGT TGCTCTCTCT GTATATCATC TACAAAATTT AAATGTTTTT 
TCTGATTGAA TGTGAGAATT TGCAAACACC AGATTCCTTC TTCATCGGGA 
ACGTCAAAAA GTCACCGGAA GAGACGAGAG AGCGACGGCG AAGTAGAGAG 
AACATTCTAA ACCGGTTTAG TGTTTTAAAT AAAATACCGT GAATTATCGG 
TTTAGCTGAG AGCGACTATT GCTGAAACCG GTCTAGTCTT ACCAAATTTC 
TACCTATTTT TCCTTTGGTC AACAAACGTT ATATCGACAG TCAAATTGCG 
GTTGGATGTA TTTAATACCA AATTATTGAA ACCGTTATGT ATGATTTGAT 
AACGCATTAA ACCGTTTTGT AAGAACAAAA TTGAACG

Gene models with high sequence identity

  1. AT2G40160.1 [+] show detail - Plant protein of unknown function (DUF828)
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT2G40160.1

Model type
Protein coding
Short Description
Plant protein of unknown function (DUF828)
Curator Summary
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational Description
TBL30; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: stem, leaf whorl, hypocotyl, root, leaf; EXPRESSED DURING: LP.02 two leaves visible; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT3G55990.1); Has 1330 Blast hits to 1307 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1330; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-K03 introduced

  • F12230 - rosette leaf::decreased size / rosette leaf::increased width / stem::decreased thickness / whole plant::decreased height / stem::abnormal

Mutant lines with disrupted or induced

2 mutant lines found