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RAFL09-19-K24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05523)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-K24 - full reading 
ACCTCATCAT TCTTCCTTCT GGTTAACTGA AAATGGAGTG TAGTTCAGTG 
AGTGTACTAG GAATATTACT GGTATTTCCT CTCCTTCATA ACCTTGTCAC 
CATCTCCGGG CAGAATCTTC CGGCGGTGGG TTTGTTCACT TTCGGAGATT 
CCAACTTCGA CGCTGGAAAT AAAAAGTTCC TCACAAGTGC TCCACTTCCT 
CAAAACTTTT GGCCTTACGG TAAATCTCGA GATGACCCTA AGGGCAAGTT 
TTCTGATGGC AAAATTGTCC CGGACTTTAT TGCAAAATTC ATGGGGATAC 
CACACGATTT ACCGCCGGCG CTAAAACCCG GCACCGATGT GTCACGAGGA 
GCCAGCTTCG CCGTCGGGTC CGCTTCCATT CTTGGATCTC CAAAAGATTC 
TTTGGCTCTG AATCAACAAG TGAGGAAATT CAATCAGATG ATATCAAATT 
GGAAAGTGGA TTACATTCAG AAATCAGTGT TTATGATTAG CATTGGTATG 
GAAGATTACT ACAACTTTAC CAAAAACAAT CCTAATGCTG AAGTTTCTGC 
TCAACAAGCT TTCGTTACTT CTGTCACTAA CCGGTTTAAG AGTGATATCA 
ACTTGTTGTA TTCATCTGGA GCTAGTAAAT TCGTCGTACA CTTGCTAGCG 
CCATTAGGTT GTTTACCGAT CGCAAGACAA GAATTTAAAA CCGGTAACAA 
TTGTTACGAG AAACTCAATG ATTTGGCCAA ACAACACAAC GCTAAAATTG 
GACCGATTTT GAACGAAATG GCGGAAACTA AACCGGATTT CCAATTCACC 
GTTTTCGATT TCTACAACGT TATTCTTCGC AGGACACAAA GAAACATGAA 
CTACCGGTTT TCCGTGACGA ATATATCGTG TTGCGGTGTT GGGACGCATT 
ATGCATATGG TTGTGGTTTA CCTAACGTGC ACTCGAAGTT ATGCGAATAT 
CAAAGATCCT ACCTTTACTT CGACGCACGT CATAACACAG AGAAAGCACA 
AGAAGCGTTT GCTCATCTTA TCTTTGGAGC TGACCCAAAT GTTATCCAAC 
CTATGAATGT TCGTGAGCTC ATGGTGTATC CTGTTAATGA GCCTATGCGT 
GAGTTTTGGG AGGATCCAAT GGATGAGAAG TTATCGTTAG TCCAATACTA 
GTGGATCTGT CTACCTCGTT TAGTTCTTGA GCTCACTATT TTCTATCTCT 
AGATCACGTA CGAGCTCTTG GAATTTGTAA TGTATTGTTC TTAATTAGTT 
GCGAAGTAAA ATAATTAATA CTGTTTAAAC C

Gene models with high sequence identity

  1. AT1G54020.2 [+] show detail - GDSL-like Lipase/Acylhydrolase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther LATERAL SIGNALING TARGET PROTEIN 2 0.00000000025
HMMPanther ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 0.00000000025
HMMPfam Lipase, GDSL 3.6e-47

See the detailed result >

AT1G54020.2

Model type
Protein coding
Short Description
GDSL-like Lipase/Acylhydrolase superfamily protein
Computational Description
GDSL-like Lipase/Acylhydrolase superfamily protein; FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT1G54010.1); Has 3048 Blast hits to 3018 proteins in 88 species: Archae - 0; Bacteria - 75; Metazoa - 0; Fungi - 2; Plants - 2967; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-K24 introduced

  • F03435 - Specific phenotypes were NOT observed.
  • F13918 - Specific phenotypes were NOT observed.
  • F14419 - Specific phenotypes were NOT observed.
  • F20840 - Specific phenotypes were NOT observed.
  • F22715 - Specific phenotypes were NOT observed.
  • F26023 - Specific phenotypes were NOT observed.
  • F30429 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found