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  3. RAFL09-19-L09

RAFL09-19-L09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05526)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-L09 - full reading 
CTTAGTTTGA ATTTACAGCT CTCATCACAA AGAGAGTAGC CCTTCTCGAA 
GCGAGTGAGA TATGGCAACA AAGACCGATG ATTTTGCACC ATTTCCAGTT 
AAAGATCAGC TTCCCGGAGT CGAATTTTGT GTCTCGAGCT CTCCAAATTG 
GCCGGAAGGA ATAGTTCTTG GGTTTCAACA TTACATTGTA ATGCTTGGAA 
CTACTGTAAT CATACCTTCC ATACTCGTCC CTCTAATGGG TGGTGGCGAC 
GTGGAGAAAG CGGAAGTCAT AAACACAGTA TTGTTCGTGT CAGGAATAAA 
CACGTTGTTG CAGAGTTTGT TCGGAAGTCG ACTTCCTGTG GTCATGGGAG 
CTTCTTATGC TTACCTCATC CCTGCTCTTT ACATCACTTT CTCTTATCGA 
TTCACTTACT ATCTCCATCC TCATCTCAGA TTTGAAGAGA CTATGAGAGC 
TATTCAAGGA GCTCTTATCA TTGCTTCAAT AAGTCATATG ATAATGGGTT 
TCTTCGGTTT GTGGAGAATC TTGGTCAGGT TTCTTTCTCC TCTTTCGGCT 
GCTCCTCTTG TGATTCTCAC CGGCGTTGGC CTCCTCGCCT TTGCGTTTCC 
TCAGCTTGCG AGATGTATAG AAATTGGACT CCCAGCATTG ATCATACTGA 
TAATTTTATC TCAGTATCTT CCTCACTTGT TTAAGTGTAA GAGATCAATA 
TGCGAGCAAT TCGCTGTTCT GTTCACAATA GCGATCGTCT GGGCTTACGC 
AGAGATTCTG ACAGCAGCTG GAGCTTATGA CAAAAGACCG GACAATACAC 
AGCTCAGTTG TCGAACAGAC CGGTCTGGTC TCATTAGTGC TTCTCCATGG 
GTGAGAATTC CATATCCATT GCAATGGGGA CGTCCAAGTT TCCATGGAAG 
TGATGCATTC GCAATGATGG CAGCTACTTA CGTGGCGATT GTCGAGACGA 
CAGGTTCCTT CATCGCGGCT TCAAGATTTG GCAGTGCAAC TCATATCCCT 
CCCTCGGTGC TTAGCCGTGG CATTGGATGG CAGGGCATAG GCGTTTTGCT 
GAATGGACTG TTTGGAACAG CAACTGGTTC CACAGCTTTG GTAGAAAATA 
CAGGGCTTCT AGGATTAACG AAGGTTGGGA GCAGAAGAGT GGTTCAGATA 
TCTGCAGGTT TCATGATCTT CTTCTCCATT TTCGGGAAGT TTGGGGCTGT 
TCTTGCATCA ATACCTTTAC CAATCTTTGC AGCTCTGTAC TGTGTTCTAT 
TCGCCTATGT TGCTTCTGCG GGACTTGGCC TTCTTCAGTT CTGCAACTTA 
AACAGCTTTA GGAATAAATT TATCCTCGGC TTCTCCATCT TCATTGGACT 
CTCTGTGGCG CAATACTTCA CCGAATATCT ATTCATCTCT GGTCGTGGAC 
CTGTCCACAC TCGCACTTCT GCTTTCAACG TGATAATGCA AGTGATATTC 
TCTTCCGCTG CAACGGTTGG GATAATGGCA GCGTTCTTGT TGGACTGTAC 
TCATAGCTAT GGACATGCCT CGGTGAGGAG AGACAGCGGA AGACATTGGT 
GGGAGAAATT CAGAGTCTAC CACACTGATA CTCGAACAGA AGAATTTTAC 
GCATTGCCTT ACAACCTCAA CCGATTCTTC CCTTCATTCT GAAAATCCCG 
AAAACCCAAA ACTCGGTTTT TTCAGAGTGT GAGAAACCTG CATCTAGAGA 
GATACATGTA TAATACAAAT AACTTTCCAC CTAGATAACT TTTGATGTTA 
TTTCCCTTTT TGCC

Gene models with high sequence identity

  1. AT1G49960.1 [+] show detail - Xanthine/uracil permease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther SODIUM-DEPENDENT VITAMIN C TRANSPORTER 1.9e-276
HMMPanther Xanthine/uracil/vitamin C permease 1.9e-276
HMMPfam Xanthine/uracil/vitamin C permease 8.5e-64

See the detailed result >

AT1G49960.1

Model type
Protein coding
Short Description
Xanthine/uracil permease family protein
Computational Description
Xanthine/uracil permease family protein; FUNCTIONS IN: transmembrane transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Xanthine/uracil/vitamin C permease (InterPro:IPR006043); BEST Arabidopsis thaliana protein match is: Xanthine/uracil permease family protein (TAIR:AT5G62890.3); Has 9237 Blast hits to 9206 proteins in 1901 species: Archae - 67; Bacteria - 7526; Metazoa - 351; Fungi - 134; Plants - 458; Viruses - 6; Other Eukaryotes - 695 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-L09 introduced

  • F07911 - Specific phenotypes were NOT observed.
  • F15117 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / stem::present in fewer numbers in organism
  • F16607 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

4 mutant lines found