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  3. RAFL09-19-L12

RAFL09-19-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05528)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-L12 - full reading 
AAAAACCCTA ACATTTCAGA AAGACGATTA CTCGATAACA CAGAAGAGAG 
ATTAAATGGT AAATCTCATG CGGAAGTTCG CAAAATCGAT TGGTAGACCG 
GGAACAGAAT TTTGGAGAGG GGAAGATATG ATAAGCGCAT TACCTGATCA 
TTTGCTATGT CATATACTTA TTTTTCTTTC TACTGATGAA TCTGTTTTGA 
CGAGTGTTTT GTCTTCTAGA TGGAGAAATC TCTGGAAATG GGTTCCTAGG 
TTAGACTTAA ACACCTCTGA TTTCCCATAC CCTAATGACG TAACTTGTGC 
GGCTTTCATC GACAAGTTTC TGAATCTTTA TAACGAATCC TACTTGCGGG 
AATTCAAGTT AAGAATTGAC CAAGCTAACT TTCGCAGTAA TGTATCTCTT 
TATGAGCCGT GTCTTGGTGT AGTGATTAAG AAGCCCAACG TTCGGCATTT 
CCAAGTTGAG AGTGATCTGC TTGAGCATTG GTGCACTAGT GAGATACGAT 
TAACCCTTTC TGCTTGCCAG GCATTGGTAT GCTTAAAGCT CCATTTAGTA 
TGGCTGAATG ACTTTGAGTC TCTATCTTTG CCCTGTCTCA AGATCATGTA 
CTTGGAAGAC GTTGTATTTC CTAGCGATGC GGCTGCAGAG ACGCTAATCT 
CGTGCTCTCC GGTTCTTGAA GATTTAAAAC TAAGCCTCCA TAGAGATGAT 
GTTGTAGTTG TTCTACGTGT CTACTCACAG TCACTAAAGA GCTTCACTCT 
AAAACGGGCG GTTCCTGTTT ATGCTATAAA CGGTGCACAT ACAGTGTTGG 
TCGATACTCC GAGGCTTGTG TATATGAGTC TCATAGATTA CCAATTCAAA 
AGCTTCAAGA TAATCAGCAT GAGTGACTAT GTCAAGGTTG ATCTTGATGT 
CGACTTTGAA CTGATGCGTG ATGAATTATC GGAAAGAAAT ATTGTCTATG 
ATCTTCTCAA CAATTTTTCA GGTGTTAGAA ATATGACCAT CTCGTGGACA 
ACTCTTAAGT TTATCCATAG ATTCCATGAC ATGAACCCAC TACCCAAATT 
TCGTGACTTG ACCCGTTTGC GTGCAACTAT GTCCTCAGAC GCCTCTCTGG 
AAGTGTTGCG AATCGTTCTT GAGAGCTGCC CGAAGCTGAA ACACTTTCAC 
TTCACCTTGG AATTGGTTAA TGATTTTCCA GAGGCAGTAA TAACTGGATT 
CTCGAGAGTG TTACCTCGTT GTTTGGTATT TTCCCTTGAA TCCGTTGAAA 
TGGAAAGCCC GATCACGGAG AAAGCAACGG AACTGAAACT GGTAAGATAC 
TTTCTGGAGA ACTCAGCAAC ACTCAAGAAG CTTGTTCTAC TTCTGAATCA 
TGAGTCTACT GGAGAGAAAC ACGAGCCTGG TGTCTTGAAA CAACTCATTG 
AATCTCCAAG ACGCTCTAGT TTGTGTCAAT TTGAAGTTCT TGCAGTGCCT 
CCAAATCCGG AACCGTGGTG GATTTATGTA AAACCCCAGA GGTTTCTTTA 
GTGCTATCGC TGATGAAATT CTCATACCTT CCTTTATGTT ACTCTATTTT 
TATTACGTCT ATGTTGTAAC CTACATCAAA GTTGCATTTG ACAAAGGAAG 
GGGACGGTCT AGTCCAAAAG TTTGCCACTA GGTTCCACTA CCTCATGTCG 
TTCGTTTGAA TCACCATCTT GTGCAAGTAG CTTGAATCCA TTCTTTTACA 
TCCGCTTGGA ATTTGTAAAA CTACTCTGGA AGAGTTTTTG GTATTTTGC

Gene models with high sequence identity

  1. AT5G18770.1 [+] show detail - F-box/FBD-like domains containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart FBD-like 3.89999861795218e-17
HMMPfam Leucine-rich repeat 2 0.048
HMMPfam F-box domain, cyclin-like 0.31
HMMPfam FBD 0.00000000000650000000000001
superfamily F-box domain, Skp2-like 0.00000000029

See the detailed result >

AT5G18770.1

Model type
Protein coding
Short Description
F-box/FBD-like domains containing protein
Computational Description
F-box/FBD-like domains containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT5G18780.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-L12 introduced

  • F00401 - seed::decreased length
  • F02725 - Specific phenotypes were NOT observed.
  • F08236 - Specific phenotypes were NOT observed.
  • F08326 - Specific phenotypes were NOT observed.
  • F09713 - Specific phenotypes were NOT observed.
  • F11517 - Specific phenotypes were NOT observed.
  • F22946 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found