1. Home
  2. Full-length cDNAs
  3. RAFL09-19-L13

RAFL09-19-L13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05529)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-L13 - full reading 
AAAAACATTC AGACACAAAT TTAGTTTCTT CTTCTTTTGG TTCTGTCTGA 
ATCCAATTTT CTTATATTTT ATTTCCTCCA CCACCGTGAG ATATGATCGC 
CGCCGGAGCT AAATCGCTAT TAGGGCTTTC GATGGCTTCT CCAAAAGGGA 
TTTTCGATAG CAATTCAATG AGTAATTCAA GATCTGTTGT TGTTGTTCGT 
GCTTGTGTTT CTATGGATGG ATCTCAAACT CTGAGTCATA ACAAAAATGG 
ATCTATTCCT GAGGTTAAAT CCATTAACGG TCACACGGGA CAAAAGCAAG 
GACCTTTGTC TACGGTCGGA AACTCGACAA ATATAAAGTG GCATGAATGT 
TCTGTTGAGA AAGTTGATAG ACAGAGATTG CTTGATCAGA AAGGATGTGT 
GATTTGGGTC ACCGGTCTTA GTGGTTCAGG GAAGAGTACT TTGGCTTGTG 
CTTTGAATCA GATGTTGTAT CAAAAGGGGA AGCTTTGTTA TATTCTTGAT 
GGTGATAATG TTAGGCATGG CTTAAACCGT GATCTTAGCT TTAAAGCTGA 
GGATCGTGCA GAGAATATTC GTAGAGTTGG AGAGGTTGCT AAGCTTTTTG 
CGGATGCTGG AATAATCTGC ATTGCGAGTT TGATATCTCC TTATAGAACA 
GATAGGGACG CTTGTCGAAG TTTGCTCCCC GAGGGAGATT TTGTTGAGGT 
GTTCATGGAT GTACCGCTTA GTGTTTGCGA GGCGAGGGAT CCAAAGGGTC 
TTTACAAGCT TGCTCGTGCA GGAAAGATCA AAGGTTTTAC CGGGATCGAT 
GACCCTTACG AGCCACCATT GAACTGCGAG ATTTCTCTAG GACGTGAAGG 
AGGAACTTCT CCTATCGAAA TGGCGGAAAA GGTCGTCGGA TACTTAGATA 
ACAAGGGTTA TCTTCAAGCA TAACATACTT CTAGATACAC AAATTTGTTA 
TCTCACGGTC TTAGTTCTAT TTTACGAGCC AAAGTATAAA AGTAAGCAAA 
TCCATGGCTG TTTTATGGAA TCACAAGTTC GACAAAATAA ATATAAATCT 
CATAATTTTT CTTGTCCCTT TTTTTTTGTA TCATAAATCT TGATGTTATG 
GTTCTGTATA TAATATGTGT GAAATAAGGT TAAGCCTAAA AAT

Gene models with high sequence identity

  1. AT2G14750.1 [+] show detail - APS kinase
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HAMAP Adenylylsulphate kinase, C-terminal 35.531
superfamily P-loop containing nucleoside triphosphate hyd 2.9e-44
HMMPfam Adenylylsulphate kinase, C-terminal 3e-71
HMMTigr Adenylylsulphate kinase, C-terminal 8.1e-101
Gene3D no description 1.9e-76
HMMPanther ADENYLSULFATE KINASE 1.9e-116
HMMPanther ADENYLSULFATE KINASE/SULFATE ADENYLTRANSFERAS 1.9e-116

See the detailed result >

AT2G14750.1

Model type
Protein coding
Short Description
APS kinase
Curator Summary
Encodes adenosine-5'-phosphosulfate kinase. Provides activated sulfate for sulfation of secondary metabolites, including the glucosinolates. Essential for pollen viability.
Computational Description
APS kinase (APK); CONTAINS InterPro DOMAIN/s: Adenylylsulphate kinase, C-terminal (InterPro:IPR002891); BEST Arabidopsis thaliana protein match is: APS-kinase 2 (TAIR:AT4G39940.1); Has 5042 Blast hits to 5042 proteins in 1485 species: Archae - 54; Bacteria - 2991; Metazoa - 244; Fungi - 284; Plants - 130; Viruses - 2; Other Eukaryotes - 1337 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-L13 introduced

  • F12130 - seed::increased size / seed::increased length
  • F13118 - Specific phenotypes were NOT observed.
  • F25745 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found