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  3. RAFL09-19-N06

RAFL09-19-N06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05538)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-N06 - full reading 
CTCGCCCACT CTTCTCTTCC GCACCGCTTT TGAAAAACGG CGACGCATTG 
TCTCCATTCA ATCGCCGGAA AATTAGAAGA GAAGATGGCG GCGCCGGAAG 
CTCCGGTTAA GTACGTCGGA ATATGTAAGG ATTCCGCCGC TTTCAAGCTT 
ATGAAATCGA TGGGTTGGGA AGAAGGAGAA GGACTTGGTA AAGATAAGCA 
AGGTATCAAA GGTTATGTGA GAGTTACGAA CAAACAAGAT ACATCTGGTG 
TTGGTCTTGA TAAGCCAAAT CCATGGGCAT TTGATACAAC TCAGTTCGAT 
AACATTCTCA AGAAATTGAA AGTGCAAGCT GCTCCTACCA AGACTAGCAA 
GAATGATGAT GATTCAGATA AGGAAGATGA AAGTGAAGAT GATGCTGTCA 
AATCTGAGCC TGCCAAGTTG AAGACCGTTG CTAAAGTCAC TCGTCCACAA 
GGAAGGTATA AACGTAGAGA GAAAGGGAAG CTTGTCAATT CATACTCGTC 
TAAAGATCTT GAAGGAATAC TGGTTAAGCG AACTGAGGAT CCTTCTCCTG 
CAGTTTGTGA CATAGCCGAT TCTATGGATA TTGAAATTAT ATCTGAGGAC 
CAAGATGCTA GTATTAAAGA ACAGAAAATT GAAGAACCTT CTTCGAACTG 
GTGGGGATTT AAATCCGGGT TTGTCTCGGG TGGTCTTCTG GGGGCCAAGT 
CGGGCAAAAA GAAATTAAAA GCTAGCGAGA GAAAAATGTT TAGTGAGAAT 
GATCAAGAGA ATCTTTACAA CATGGTTCAG GATAAAGCCA CAGCGGGAAA 
ACAAGGACTG GGTATCAAAG ACCGGCCAAA GAAAATAGCT GGTGTTCGTT 
ACGAAGGGAA GAAAACCTCT TTTGATAACA GTGATGATGA TGATGATGAT 
GATGATGATG ATGACGAAGA AGACGAAGAG GAAGATGAAG ACGAGAGTGA 
AGCAGATGAT GATGACAAGG ACTCTGTAAT TGAAAGTTCT CTTCCCGCGA 
AAAGGAAGCA CGATGAAATC ATTGAACCCA AAATCAAGTT AAAGAACCTG 
TGCAAGCAGA TTGTTAAAAA GGATGCTGGT AAAGGTGGAT TCATGAAGCT 
GAAACAGCTA AAATCTCTGA TCGATGAACA AGCACCATCA GTTCTTTCAG 
AGTTTTCTTC AAGAAAAGAT GCTATTGCTT ACTTGAAACT TAAGCTGGAG 
CGAAGTGGCA AGTTTGTTGT GGAGGGAAAG AAGATTAGTC TTGTATCAAG 
CAAGAAGTGA GCGAGAATTT TTGGTTGGAA TTATCATTAT ACCTGCATAG 
GAAAGTGGAG ATTAGGACAA GTTTTGTTAC TAAATCATCA CAATGCCATA 
TGTAAACAAA GATCATACTT CAGTTTGGAA AATTTTGATT TGATTGTAAT 
CTATTTTTAC ATTCTATTAG AGTTTGCATA AAACTTCACC CTAATAAGTT 
ACTCTCTTAT ATTTGGAACC

Gene models with high sequence identity

  1. AT1G63980.1 [+] show detail - D111/G-patch domain-containing protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart D111/G-patch 1.4e-11
HMMPfam D111/G-patch 2.9e-14
HMMPanther PIN2-INTERACTING PROTEIN X1 (PINX1) (LIVER- R 8e-11
HMMPanther G PATCH DOMAIN CONTAINING PROTEIN 8e-11
ProfileScan D111/G-patch 14.528

See the detailed result >

AT1G63980.1

Model type
Protein coding
Short Description
D111/G-patch domain-containing protein
Computational Description
D111/G-patch domain-containing protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: D111/G-patch (InterPro:IPR000467); Has 18077 Blast hits to 9113 proteins in 508 species: Archae - 9; Bacteria - 1331; Metazoa - 6165; Fungi - 2709; Plants - 1373; Viruses - 248; Other Eukaryotes - 6242 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-N06 introduced

  • F12733 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem::abnormal
  • F28232 - seed::increased size

Mutant lines with disrupted or induced

3 mutant lines found