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  3. RAFL09-19-P22

RAFL09-19-P22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05546)

full reading [+] show sequence

Nucleotide sequence: RAFL09-19-P22 - full reading 
GAGACTAAGG TGAATCCATG GCGTCCAAGA TTGTCTCAGC CATAGTATTT 
GTGTTTAACC TCATTGCCTT TGGTTTAGCC GTTGCTGCTG AACAAAGAAG 
AAGCACTGCA AGGGTTGTGC AGGACACTGA GGTGCAATAT AACTACTGTG 
TGTATGACTC GGACAGAGCT ACAGGGTATG GAGTTGGAGC CTTTTTGTTC 
TCAGTGGCTA GTCAAATCCT TATCATGCTC GTTAGCCGTT GCTTCTGTTG 
TGGAAAGCCT CTCAAGCCTG GCGGTTCACG CGCTCTTGCC CTCATTCTCT 
TCATTGTTAG CTGGATGTTC TTCTTGATAG CGGAGATATG TCTATTAGCT 
GGATCGGTAG AGAATGCATA CCACACAAAG TACAGGACAA TGTTCATGGA 
CAATCCTCCT GATTGTCAAA CTCTACGTAA AGGCGTCTTT GCAGCAGGCG 
CCTCATTCGT CTTCTTCAAC GCCATTGTCT CTCAGTTCTA CTATTTCTTC 
TATTTCTCTG CTGCTGAGGC CTCTCTTTCA CCTTACTAGA GGTTCTTAAC 
CAACAAATAA GTTTTATTTT TTTCTCTCTA AATGTGCTAT TTGATATGCT 
AATATCATAT TTTGAGGTGG GTTTTCTATG TACAACTATG ATGAAATGTT 
ACAACTATGA CAAAATTATT TGAAAGTGAT GGTACACATG AGATTTGTAG 
ATTTATTTGT ATGGTTATTA GATCGAGTTG AAATGTTGTT TTAAAAAGAG 
TGGATGTAAT TTGACGATTT TGTGACATAT GACATAATGC TCTTATTCAT 
TGAG

Gene models with high sequence identity

  1. AT4G27435.1 [+] show detail - Protein of unknown function (DUF1218)
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

See the detailed result >

AT4G27435.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF1218)
Computational Description
Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1218) (TAIR:AT3G15480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-19-P22 introduced

  • F12336 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found