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RAFL09-20-B22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05558)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-B22 - full reading 
ACCACACTGT CTCCATCTTT CTTTCCTCTT CTTCAACATC TCTCTTCTCC 
CAAGAAAATA AAACACAATT TCCCAGATTC AAAACTTCTT TTTCACAAAT 
CACAACGTCT TCAAAGGGAT CAAGAATCTT ATTACTCTTC TCTTCTTTTG 
CTTTTAAGAA GAAGTAAAAA CATCATCTTA ACTTTCACTT TTTGTATTAT 
CTTTCTCTTT CACTCACTTT AAAGTCTATT TAGAGATTCA AAAACAAAAT 
CTTCCAGAAA CTGCTTCTGA TCTTAGAAGA TGACTCACTT CTCCTAAAAA 
GCACCAATTT CAATCCTATT TTTTTCTCTT GTTTTCCGGC AAGATTTGGT 
AAAATTTTGT GTTCTGATTT GTTGTTTTGA ATATCAACTA TGGAACAACG 
GAAGAAAGGT TGTAAGATCA GGAAGAGAGG TGGTTCTTCC TCTTCTTCTT 
CTTCACTTGC TCGTCGAAAC CGCTTCAAAC GTGCAATTTT CGCCGGGAAA 
AGAGCCGCTC AAGACGACGG TGGCTCAGGA ACTCCTGTTA AGTCCATCAC 
CGCCGCTAAA ACTCCAGTTC TGTTATCGTT TTCGCCGGAA AATCTTCCTA 
TAGATCATCA TCAATTGCAG AAAAGCTGCG TGTCGGCGAG AAAGCTAGCT 
GCGACGCTGT GGGAAATCAA CGACGACGCA GACCCTCCGG TAAATTCTGA 
TAAAGATTGC TTGAGAAGCA AGAAACCATC GAGATACAGA GCGAAGAAAT 
CAACAGAGTT CTCTTCCATT GATTTCCCGC CACGATCATC CGATCCGATT 
TCTCGTCTAA GCTCAGAGAG AATCGATCTC TGTGACGATA TGATTCGTAG 
AAGATCAACA AATCCTCAGA AATTAAACCC AATTGAATAC AAAATCATTG 
GCGCAAACTC GGTGAAAACT CGTTTCAAGA ATGTCAGTGA CGGATTAACA 
ACGTCTAAAG AACTGGTAAA GGTATTAAAA AGGATCGGTG AGCTCGGAGA 
TGATCACAAG ACAGCAAGCA ATCGTTTGAT CTCTGCTTTG TTATGTGAAC 
TAGACAGAGC AAGATCTTCA CTAAAGCATC TAATGAGTGA ATTAGATGAA 
GAGGAAGAGG AGAAGCGGAG GTTGATAGAG AGTCTACAAG AAGAGGCGAT 
GGTTGAGAGA AAACTCCGGC GAAGAACAGA GAAGATGAAT AGAAGATTAG 
GGAGAGAGCT CACGGAGGCT AAAGAAACAG AGAGGAAGAT GAAGGAGGAG 
ATGAAAAGAG AGAAGAGAGC TAAAGATGTT CTTGAAGAGG TTTGTGATGA 
GCTAACTAAA GGAATCGGAG ATGATAAGAA GGAGATGGAG AAAGAGAGAG 
AGATGATGCA TATAGCTGAT GTTTTGAGGG AAGAGAGAGT TCAAATGAAG 
CTTACGGAGG CGAAGTTTGA GTTCGAAGAT AAATACGCCG CCGTGGAGCG 
GCTGAAGAAG GAGCTCCGGC GGGTTTTGGA TGGTGAAGAA GGAAAAGGGT 
CGTCGGAGAT TCGTAGGATT TTGGAGGTGA TTGATGGTTC TGGTTCTGAT 
GATGATGAGG AGAGTGATCT TAAGTCCATT GAGTTGAACA TGGAGAGTGG 
TAGTAAATGG GGTTATGTTG ATAGCCTGAA AGATCGTCGG AGATTTGATG 
GCTCCGGCGG CGATGATGAT GATGATGATC CGGTGGAGAA GAGATCAGTG 
ATTGTTGAGA ATGGTGAGAG AGATGAGTCT TTGAAGACTT TGAGAGATTA 
CATTGTTTCA AATGTTAGAT GTATTGGTCC TTCATCGTCA GAGCAGTGGA 
ATCATCGGAA TTTACCAAGC TCTGAGTTTG TGTAATCACC ACCGCTAGCG 
CCGGCGAGGA AGAAAAAGAA ATCATTTTTT TTTATAGTAT ATAATATTTC 
AGTATTTGTA ATTTATTCAA TTTAATTTGA AATACAAAAT CAATTACG

Gene models with high sequence identity

  1. AT5G22310.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11590.1); ...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT5G22310.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-B22 introduced

  • F17438 - Specific phenotypes were NOT observed.
  • F23122 - rosette leaf::increased size / rosette leaf::increased length / cauline leaf::increased size / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found