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  3. RAFL09-20-C24

RAFL09-20-C24

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05562)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-C24 - full reading 
CCTTCCTTGA AACTGAGCTT GCATAATTGA TGATATCAGC ACTGATTTTT 
TTTCCCTTTA ACTGATATAT TGCAAGGACA AAGTTAATCT CCATTTCTGG 
GTATGTAAAT ATGGCTAAAC CCACTATAAA TATACCCCCT TACTTTGAGT 
CCTGAGGCAG TCATTACCTC TCTTCTTCTT CTTCTTCTTC TTCTTCTTTC 
TTTGGGTTAG CTGAGAAATG GATGTAATGA AGCTTGATCA CGACAGTGTA 
TTAAAAGAGC TTGAGAGGAT CACCTCGAAA GCTGCTGAAG TTCAAGATAA 
CATTTTACGT GGGATCTTGG AAAGAAACAA GGACACAGAG TACTTGAGTA 
AGTACATGAA TGGCTCTAAG GATGTTCTGG AGTTTAAACG CGCTGTGCCA 
ATCATCATAT ACAAAGATAT CTATCCGTAC ATTCAGAGAA TTGCTAATGG 
AGAAGACTCA TCTCTTATTA CTGGCCATTC TATTACTGAA ATATTATGCA 
GCTCTGGGAC TTCTGCTGGA GAGCCAAAGC TAATGCCAAC CATTCCTGAA 
GATCTTGATC GCCGCACTTT TCTCTACAAT CTTATCATTC CAATCGTGAA 
CAAGTACATA ACAGGACTTG ACAAAGGAAA AGCAATGTAC CTAAATTTCG 
TAAAGGCTGA AACATCAACT CCTTGTGGTT TACCAATCAG AGCTGTCCTC 
ACTAGTTACT ACAAAAGCAA GCATTTCCAG TGCAGACCTT ATGATCCATT 
CAACGACTTA ACCAGTCCTA TCCAAACCAT CCTTTGTGAA GACAGCAACC 
AAAGCATGTA CTGTCAGTTA CTAGCCGGTC TGATTCACCG TCACAAGGTG 
ATGCGTTTAG GAGCAGTCTT TGCTTCAGCG TTTCTCCGTG CAATCTCTTA 
TCTCGAGAAG AAATGGAGTC AGCTCTGTGA AGACATCCGC ACCGGTAGTC 
TCAACCCCAT GATCACCGAT CCAGGTTGCC AAATGGCAAT GTCTTGTCTT 
TTAATGTCGC CGAATCCAGA GTTAGCTAGC GAGATCGAAG AGATCTGTGG 
GCGGTCGTCG TGGAAAGGGA TTCTGTGTCA GCTCTGGCCT AAGGCAAAGT 
TCATCGAAGC AGTAGTGACG GGCTCAATGG CTCAATACAT ACCTGCACTT 
GAGTTTTTTA GCCAGGGGAA GATTCCATTG GTTTGTCCAA TGTATGCTTC 
CTCTGAGACT TACTTTGGAG TCAACGTGGA ACCACTCTCC AAACCATCTG 
ACGTCGTTTT CACTCTCTTG CCTAACATGT GCTACTTCGA GTTTATCCCT 
CTCGGCAAAA ACGGGACACT CTCTTTTGAT CTAGACGACG ATGAACAAGT 
CCCCTGTGAT AAAGTCGTTG ACTTGGTCAA TGTCAAACTC GGCCGCTACT 
ATGAACTGGT CGTCACAACT TTCGCAGGAT TGTACCGTTA CCGAATCGGC 
GACGTTCTTC AAGTGGCGGG TTTCTACAAC GGAGCACCAC AGTTCCGGTT 
TATCTGCAGG AGAAACGTGG TTCTAAGCAT CGACTTAGAC AAAACCAACG 
AAGAAGATCT ACACAGGAGC ATAACGTTAG CCAAGAAGAA GCTTGGAAGC 
AACGCATTCC TGGCGGAGTA CACGAGCTAC GCGGACACGT CATCAGTGCC 
AGGTCACTAC GTGCTATTCT GGGAGATCCA AGGTCATCTC GAGCCGAAAC 
TGATGGAAGA GTGTTGCGTT GCGGTGGAGG AAGAGCTGGA CTACATATAC 
AGACAGTGCA GGACGAAAGA GAGATCGATA GGGGCATTAG AGATCAGAGT 
GGTGAAACCA GGAACGTTCG AGAAACTGAT GGATCTGATT ATAAGCCAAG 
GAGGGTCGTT TAATCAGTAT AAAACGCCGA GATGTGTCAA GTCCAACAGT 
GCAACGTTCA AGCTCTTGAA CGGACACGTA ATGGCTTCTT TCTTTAGCCC 
TCGTGACCCG ACTTGGGTTC CATGATCCCA AGACTTTTAA TCATCATTAC 
CAAATTTTTA CACTCTCTGT AATAATAACC ATCCGATC

Gene models with high sequence identity

  1. AT2G47750.1 [+] show detail - putative indole-3-acetic acid-amido synthetase GH3.9
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam CheW-like protein 1.6e-05
HMMPfam GH3 auxin-responsive promoter 4.9e-193
Coil coiled-coil 0

See the detailed result >

AT2G47750.1

Model type
Protein coding
Short Description
putative indole-3-acetic acid-amido synthetase GH3.9
Curator Summary
Encodes GH3.9, a member of the GH3 family auxin-responsive genes. gh3.9-1 mutants had greater primary root length, increased sensitivity to indole-3-acetic acid (IAA)-mediated root growth inhibition, but no obvious effects on apical dominance or leaf morphology.
Computational Description
putative indole-3-acetic acid-amido synthetase GH3.9 (GH3.9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to auxin stimulus; LOCATED IN: chloroplast envelope; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: GH3 auxin-responsive promoter (InterPro:IPR004993); BEST Arabidopsis thaliana protein match is: Auxin-responsive GH3 family protein (TAIR:AT1G28130.1); Has 1429 Blast hits to 1301 proteins in 228 species: Archae - 0; Bacteria - 485; Metazoa - 53; Fungi - 2; Plants - 681; Viruses - 0; Other Eukaryotes - 208 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-C24 introduced

  • F15705 - Specific phenotypes were NOT observed.
  • F21320 - Specific phenotypes were NOT observed.
  • F24630 - rosette leaf::abnormal / rosette leaf::abnormal / stem::abnormal / whole plant::decreased height

Mutant lines with disrupted or induced

5 mutant lines found