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  3. RAFL09-20-F12

RAFL09-20-F12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05575)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-F12 - full reading 
GAGTTTCTTG GATCATCACA CTCACCTGCT TCGTTACTCT TCCCTTGGAT 
TGGATTGGAT TGGATTCGCT CTTTCATGGT TGAAGAATGA GATCTCACCA 
AGCTGGCCGC AAACTTCCGC TTCTTCAACT TCTCGGCTGC GTCGCTGTTT 
TCTCCGTTTT CGTTTTCACC ATCCAATCTT CCTTCTTCGC AGATAATAAT 
CGTAAACTAG ATCTTCAGCC GGAAGATATC CAGATCTTGT CAGATTTTCA 
GTCCAGCGTT CAACAGTGCG TGGCTAACAG AGGGCTTGGA CTCTCTGCCC 
ATATTATCGA TCACTGTAAT CTTATCCTCA AGTTCCCTGA AGGCACTAAC 
AGTACTTGGT ACAATGCACA ATTTAAAGTT TTTGAAGCAT TGGAGTTCAA 
GTATAATGTT TGTGAGGCAG TTCTCTTATG GGAGCAGTAC CGCAATATGA 
CTACAGTATT GACAAGAGAA TACCTCGATG TACGCCCTGA TGGGTGGTTG 
GACTACGCAG CTATGAGAAT TGCACAGTTG GGAGCTGATA AGTGTTATAA 
TCGTACATTG TGTGAAGAGC ATCTTAATGT GATTCTTCCA GCGAAGCCTC 
CTTTTCACCC ACGGCAGTTT CATAAATGCG CTGTTGTTGG AAATTCTGGA 
GATCTGTTAA AAACAGAGTT CGGAGAAGAG ATTGACAGTC ATGATGCTGT 
ATTTCGAGAC AATGAAGCTC CTGTCAATGA GAAGTATGCC AAGTACGTAG 
GAGTGAAAAG GGATTTCCGA CTAGTTGTTC GTGGTGCAGC TCGTAACATG 
ATTAAGATTC TCAATGGGTC TGACAATGAA GTGCTTATAA TAAAAAGTGT 
GACCCACCGA GACTTCAATG AAATGATAAA GCGTATACCA AACCCTGTTT 
ATCTTTTCCA AGGAATTGTC CTACGCAGAG GTGCCAAAGG AACCGGGATG 
AAATCCATTG AACTAGCATT GTCCATGTGC GATATTGTTG ACATATATGG 
TTTCACTGTT GATCCTGGAT ACACAGAGTG GACGCGTTAC TTTTCCACGC 
CAAGGAAAGG GCACAACCCA CTTCAAGGAA GGGCATACTA CCAACTTCTA 
GAGTGTCTTG GTGTAATACG GATCCATTCT CCCATGAGAT CCGAGAGAAA 
GGAGGACTGG TCAAGTGTGC CAAGTCGTGA AATGATAAGC AGAGCTCACA 
CAGCTGCCTT ACGCCTACAA AGGAGCCAAC AGCCAACTAG TTCGAAGAGG 
GATGGGTCAG GACAATTCGG TAATTGCAAG GTGTGGGGCG ATGCAGACCC 
TACAAAAGGA CCTGTCTCGG GATCTCCGGA CATGAGTGAG ACCAGGAAGA 
AGTCAAATTA CAAGAAATGG GAAGTGATGC CGTTTAGGAG CTTAAGAAAG 
GAAGCTAGGG ATCACTATAT CCAAATGAAA GGCGTGTCAC AGTATAAGAT 
GGATGGAAAT AAGCTGGACG ATCTGGTTTG CGTGAGGCAT CCACTGAAAT 
TAGATACGTA AATTTTTTTA TCATCTTGTA AAGGTTCAAT TTCAATAACA 
TCTTGAGCTT ACAAAGTAAA GGTTCCTACA TTTCAC

Gene models with high sequence identity

  1. AT1G08660.1 [+] show detail - MALE GAMETOPHYTE DEFECTIVE 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Glycosyl transferase, family 29 4.7e-26
HMMPfam Glycosyl transferase, family 29 1.1e-12
HMMPanther ALPHA-2,8-SIALYLTRANSFERASE 8B (ST8SIA II) 2.2e-16
HMMPanther ALPHA-2,8-SIALYLTRANSFERASE 2.2e-16

See the detailed result >

AT1G08660.1

Model type
Protein coding
Short Description
MALE GAMETOPHYTE DEFECTIVE 2
Computational Description
MALE GAMETOPHYTE DEFECTIVE 2 (MGP2); FUNCTIONS IN: transferase activity, transferring glycosyl groups, sialyltransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: Golgi apparatus, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 29 (InterPro:IPR001675); BEST Arabidopsis thaliana protein match is: Glycosyltransferase family 29 (sialyltransferase) family protein (TAIR:AT3G48820.1); Has 1529 Blast hits to 1526 proteins in 78 species: Archae - 0; Bacteria - 0; Metazoa - 1325; Fungi - 0; Plants - 155; Viruses - 13; Other Eukaryotes - 36 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-F12 introduced

  • F24143 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found