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  3. RAFL09-20-F20

RAFL09-20-F20

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda05576)

full reading [+] show sequence

Nucleotide sequence: RAFL09-20-F20 - full reading 
AAAACCCAAA CACATAAAAA AATGAGTCAA CACAACATCT TAGAAGCTCT 
AAATGTCCGG GTCGTGGGTA CGGGTGATCG GATCCTGTTT TTGGCCCATG 
GATTCGGTAC TGACCAATCA GCTTGGCACT TGATCCTTCC TTACTTCACT 
CAAAACTACA GAGTCGTCCT CTATGACCTA GTTTGCGCCG GCAGTGTCAA 
CCCCGATTAC TTCGATTTCA ATCGTTACAC AACTCTCGAT CCTTACGTCG 
ATGATCTTCT CAACATCGTT GATTCACTCG GAATCCAAAA CTGTGCTTAC 
GTTGGTCACT CTGTTTCCGC TATGATCGGA ATCATCGCTT CGATTCGTCG 
GCCGGAGCTT TTCTCCAAGC TTATCTTGAT CGGATTTTCG CCTAGGTTTC 
TCAACGACGA GGATTATCAT GGAGGATTCG AAGAAGGTGA GATTGAGAAA 
GTTTTCTCAG CTATGGAAGC TAATTACGAA GCTTGGGTTC ATGGATTTGC 
TCCGCTTGCT GTTGGAGCTG ATGTTCCGGC GGCGGTTAGA GAATTTAGCC 
GGACTTTGTT TAATATGCGT CCGGATATAT CTCTGTTTGT TTCGAGGACG 
GTTTTCAACA GCGATCTGAG AGGTGTGCTT GGGTTAGTTA GAGTTCCGAC 
GTGTGTGATT CAGACGGCGA AGGATGTTTC TGTGCCGGCT TCGGTGGCGG 
AGTATCTTAG GTCTCATCTC GGTGGAGATA CTACTGTGGA GACTCTTAAA 
ACTGAAGGAC ATTTGCCGCA GCTTAGTGCT CCGGCGCAGC TTGCTCAGTT 
TCTCCGGCGA GCTCTTCCTC GGTGACTTTT TTTTATAGAT ATAAAAAGAG 
AACAATAAAA TATAATTGGT GGAATATGGG TTTAGTGGGG TCCACGTATC 
GAAGAAAAGA AGGGCCTCTA TTTGTGGAGG ACAGTTTGGC ATTGTCACAA 
ATCTAGTAAG ATAAGATTGT TCACTTGACA CGTGACTTTC GCTTTTTTAT 
CACTTTTTTT CTTGCTCTCT TCATTAGTTT ATAATCACAA GTTTATTTCA 
TAAAATAATT GGAGAATAAC C

Gene models with high sequence identity

  1. AT3G03990.1 [+] show detail - alpha/beta-Hydrolases superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 3e-38
superfamily alpha/beta-Hydrolases 9.9e-42
HMMPfam Alpha/beta hydrolase fold-1 4.7e-09
HMMPanther SIGMA FACTOR SIGB REGULATION PROTEIN RSBQ 2.7e-154
HMMPanther ALPHA/BETA HYDROLASE RELATED 2.7e-154

See the detailed result >

AT3G03990.1

Model type
Protein coding
Short Description
alpha/beta-Hydrolases superfamily protein
Computational Description
alpha/beta-Hydrolases superfamily protein; CONTAINS InterPro DOMAIN/s: Alpha/beta hydrolase fold-1 (InterPro:IPR000073); BEST Arabidopsis thaliana protein match is: alpha/beta-Hydrolases superfamily protein (TAIR:AT4G37470.1); Has 7052 Blast hits to 7050 proteins in 1427 species: Archae - 69; Bacteria - 5615; Metazoa - 94; Fungi - 57; Plants - 279; Viruses - 0; Other Eukaryotes - 938 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL09-20-F20 introduced

  • F02620 - Specific phenotypes were NOT observed.
  • F03904 - Specific phenotypes were NOT observed.
  • F08040 - Specific phenotypes were NOT observed.
  • F13602 - rosette leaf::desaturated green / rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in greater numbers in organism / stem::abnormal / cauline leaf::abnormal
  • F18028 - Specific phenotypes were NOT observed.
  • F22843 - Specific phenotypes were NOT observed.
  • F24351 - Specific phenotypes were NOT observed.
  • F30430 - seed::increased size

Mutant lines with disrupted or induced

9 mutant lines found